Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2283652..2283920 | Replicon | chromosome |
| Accession | NZ_LR778142 | ||
| Organism | Escherichia coli isolate SC434 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2283690..2283792 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2283652..2283920 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1D10_RS11245 | 2280809..2282248 | + | 1440 | WP_097420077.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H1D10_RS11250 | 2282366..2282602 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1D10_RS11255 | 2282707..2282898 | + | 192 | WP_001317886.1 | YebW family protein | - |
| H1D10_RS11260 | 2282899..2283555 | - | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| - | 2283652..2283920 | + | 269 | - | - | Antitoxin |
| - | 2283690..2283792 | - | 103 | - | - | Toxin |
| H1D10_RS11265 | 2283950..2284291 | - | 342 | WP_000976472.1 | YebY family protein | - |
| H1D10_RS11270 | 2284304..2285176 | - | 873 | WP_112886263.1 | copper homeostasis membrane protein CopD | - |
| H1D10_RS11275 | 2285180..2285554 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H1D10_RS11280 | 2285693..2285923 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1D10_RS11285 | 2286025..2286681 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| H1D10_RS11290 | 2286705..2287367 | + | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T289117 NZ_LR778142:c2283792-2283690 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT289117 NZ_LR778142:2283652-2283920 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
