Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/PRK09907-MazE
Location 2447997..2448580 Replicon chromosome
Accession NZ_LR778141
Organism Escherichia coli isolate SC407

Toxin (Protein)


Gene name mazF Uniprot ID U9XFN8
Locus tag H1C92_RS12110 Protein ID WP_000254745.1
Coordinates 2447997..2448332 (-) Length 112 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID S1P3W5
Locus tag H1C92_RS12115 Protein ID WP_000581937.1
Coordinates 2448332..2448580 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H1C92_RS12090 2443466..2443828 + 363 WP_000034929.1 hypothetical protein -
H1C92_RS12095 2443884..2445182 - 1299 WP_000036723.1 phosphopyruvate hydratase -
H1C92_RS12100 2445270..2446907 - 1638 WP_000210878.1 CTP synthase (glutamine hydrolyzing) -
H1C92_RS12105 2447135..2447926 - 792 WP_001071648.1 nucleoside triphosphate pyrophosphohydrolase -
H1C92_RS12110 2447997..2448332 - 336 WP_000254745.1 endoribonuclease MazF Toxin
H1C92_RS12115 2448332..2448580 - 249 WP_000581937.1 type II toxin-antitoxin system antitoxin MazE Antitoxin
H1C92_RS12120 2448658..2450892 - 2235 WP_000226815.1 GTP pyrophosphokinase -
H1C92_RS12125 2450940..2452241 - 1302 WP_000046790.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(10-109)

Antitoxin

SpoVT-AbrB domain

(7-51)


Sequences

Toxin        


Download         Length: 112 a.a.        Molecular weight: 12158.08 Da        Isoelectric Point: 8.4777

>T289097 WP_000254745.1 NZ_LR778141:c2448332-2447997 [Escherichia coli]
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG

Download         Length: 336 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9355.74 Da        Isoelectric Point: 4.4665

>AT289097 WP_000581937.1 NZ_LR778141:c2448580-2448332 [Escherichia coli]
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0XYM3

Antitoxin

Source ID Structure
PDB 1UB4
PDB 5CQX
PDB 5CQY
PDB 1MVF
PDB 2MRN
PDB 2MRU
AlphaFold DB A0A7U9LMB4

References