Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2136244..2136515 | Replicon | chromosome |
| Accession | NZ_LR778140 | ||
| Organism | Escherichia coli isolate SC406 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2136374..2136477 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2136244..2136515 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C94_RS10080 | 2132799..2133461 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H1C94_RS10085 | 2133485..2134141 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| H1C94_RS10090 | 2134243..2134473 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1C94_RS10095 | 2134612..2134986 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H1C94_RS10100 | 2134990..2135862 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H1C94_RS10105 | 2135875..2136216 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2136244..2136515 | - | 272 | - | - | Antitoxin |
| - | 2136374..2136477 | + | 104 | - | - | Toxin |
| H1C94_RS10110 | 2136612..2137268 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H1C94_RS10115 | 2137269..2137460 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H1C94_RS10120 | 2137565..2137801 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1C94_RS10125 | 2137919..2139358 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289069 NZ_LR778140:2136374-2136477 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289069 NZ_LR778140:c2136515-2136244 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
