Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 3166166..3166820 Replicon chromosome
Accession NZ_LR740776
Organism Escherichia coli strain BEN2908 isolate

Toxin (Protein)


Gene name cptA Uniprot ID S1PAM6
Locus tag APEC2908_RS15590 Protein ID WP_000244781.1
Coordinates 3166166..3166573 (-) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S1PPB1
Locus tag APEC2908_RS15595 Protein ID WP_000354046.1
Coordinates 3166554..3166820 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
APEC2908_RS15570 3162123..3163856 - 1734 WP_000813190.1 single-stranded-DNA-specific exonuclease RecJ -
APEC2908_RS15575 3163862..3164572 - 711 WP_000715230.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
APEC2908_RS15580 3164597..3165493 - 897 WP_000806987.1 site-specific tyrosine recombinase XerD -
APEC2908_RS15585 3165605..3166126 + 522 WP_001055874.1 flavodoxin FldB -
APEC2908_RS15590 3166166..3166573 - 408 WP_000244781.1 protein YgfX Toxin
APEC2908_RS15595 3166554..3166820 - 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
APEC2908_RS15600 3167063..3168043 + 981 WP_000886078.1 tRNA-modifying protein YgfZ -
APEC2908_RS15605 3168120..3168779 - 660 WP_000250274.1 hemolysin III family protein -
APEC2908_RS15610 3168943..3169254 - 312 WP_001182956.1 N(4)-acetylcytidine aminohydrolase -
APEC2908_RS15615 3169299..3170732 + 1434 WP_001350137.1 6-phospho-beta-glucosidase BglA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16061.99 Da        Isoelectric Point: 11.5202

>T289007 WP_000244781.1 NZ_LR740776:c3166573-3166166 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>AT289007 WP_000354046.1 NZ_LR740776:c3166820-3166554 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PAM6

Antitoxin

Source ID Structure
PDB 6B58
PDB 1X6I
PDB 1X6J
PDB 6C12
AlphaFold DB A0A7U9QD57

References