Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1875217..1875485 | Replicon | chromosome |
| Accession | NZ_LR740776 | ||
| Organism | Escherichia coli strain BEN2908 isolate | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1875255..1875357 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1875217..1875485 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APEC2908_RS09245 | 1872374..1873813 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| APEC2908_RS09250 | 1873931..1874167 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| APEC2908_RS09255 | 1874272..1874463 | + | 192 | WP_001296140.1 | YebW family protein | - |
| APEC2908_RS09260 | 1874464..1875120 | - | 657 | Protein_1814 | protein-serine/threonine phosphatase | - |
| - | 1875217..1875485 | + | 269 | - | - | Antitoxin |
| - | 1875255..1875357 | - | 103 | - | - | Toxin |
| APEC2908_RS09265 | 1875515..1875856 | - | 342 | WP_000984819.1 | YebY family protein | - |
| APEC2908_RS09270 | 1875869..1876741 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| APEC2908_RS09275 | 1876745..1877119 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| APEC2908_RS09280 | 1877258..1877488 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| APEC2908_RS09285 | 1877590..1878246 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| APEC2908_RS09290 | 1878269..1878931 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T289000 NZ_LR740776:c1875357-1875255 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT289000 NZ_LR740776:1875217-1875485 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
