Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1361467..1361735 | Replicon | chromosome |
| Accession | NZ_LR740758 | ||
| Organism | Escherichia coli strain BEN5202 isolate laying hen 51 weeks old | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1361595..1361697 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1361467..1361735 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APEC5202_RS06535 | 1358021..1358683 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| APEC5202_RS06540 | 1358706..1359362 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| APEC5202_RS06545 | 1359464..1359694 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| APEC5202_RS06550 | 1359833..1360207 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| APEC5202_RS06555 | 1360211..1361083 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| APEC5202_RS06560 | 1361096..1361437 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 1361467..1361735 | - | 269 | - | - | Antitoxin |
| - | 1361595..1361697 | + | 103 | - | - | Toxin |
| APEC5202_RS06565 | 1361832..1362488 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| APEC5202_RS06570 | 1362489..1362680 | - | 192 | WP_001296140.1 | YebW family protein | - |
| APEC5202_RS06575 | 1362785..1363021 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| APEC5202_RS06580 | 1363139..1364578 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T288955 NZ_LR740758:1361595-1361697 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT288955 NZ_LR740758:c1361735-1361467 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
