Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 3878469..3879016 Replicon chromosome
Accession NZ_LR723670
Organism Rhizobium flavum strain YW14

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag GFD27_RS18960 Protein ID WP_077548944.1
Coordinates 3878723..3879016 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag GFD27_RS18955 Protein ID WP_077548945.1
Coordinates 3878469..3878723 (+) Length 85 a.a.

Genomic Context

GFD27_RS18935GFD27_RS18945GFD27_RS18950GFD27_RS18955GFD27_RS18960GFD27_RS18965GFD27_RS18970GFD27_RS18995GFD27_RS18930GFD27_RS18940GFD27_RS18975GFD27_RS18980GFD27_RS18985GFD27_RS18990
Location: 3875030..3875986 (957 bp)
Type: Others
Protein ID: WP_172977909.1
Location: 3877670..3877924 (255 bp)
Type: Others
Protein ID: WP_077548947.1
Location: 3877921..3878343 (423 bp)
Type: Others
Protein ID: WP_077548946.1
Location: 3878469..3878723 (255 bp)
Type: Antitoxin
Protein ID: WP_077548945.1
Location: 3878723..3879016 (294 bp)
Type: Toxin
Protein ID: WP_077548944.1
Location: 3879153..3879851 (699 bp)
Type: Others
Protein ID: WP_077548943.1
Location: 3879878..3880204 (327 bp)
Type: Others
Protein ID: WP_172977878.1
Location: 3883176..3883787 (612 bp)
Type: Others
Protein ID: WP_077548937.1
Location: 3873792..3874844 (1053 bp)
Type: Others
Protein ID: WP_172977877.1
Location: 3876253..3876852 (600 bp)
Type: Others
Protein ID: Protein_3725
Location: 3880224..3880886 (663 bp)
Type: Others
Protein ID: WP_077548941.1
Location: 3880883..3881176 (294 bp)
Type: Others
Protein ID: WP_077548940.1
Location: 3881688..3881951 (264 bp)
Type: Others
Protein ID: WP_077548939.1
Location: 3882465..3883001 (537 bp)
Type: Others
Protein ID: WP_139346292.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
GFD27_RS189303873792..3874844-1053WP_172977877.1Gfo/Idh/MocA family oxidoreductase-
GFD27_RS189353875030..3875986+957WP_172977909.1LacI family DNA-binding transcriptional regulator-
GFD27_RS189403876253..3876852-600Protein_3725hypothetical protein-
GFD27_RS189453877670..3877924+255WP_077548947.1type II toxin-antitoxin system Phd/YefM family antitoxin-
GFD27_RS189503877921..3878343+423WP_077548946.1type II toxin-antitoxin system VapC family toxin-
GFD27_RS189553878469..3878723+255WP_077548945.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
GFD27_RS189603878723..3879016+294WP_077548944.1type II toxin-antitoxin system RelE/ParE family toxinToxin
GFD27_RS189653879153..3879851+699WP_077548943.1IS6 family transposase-
GFD27_RS189703879878..3880204+327WP_172977878.1EAL domain-containing protein-
GFD27_RS189753880224..3880886-663WP_077548941.1ankyrin repeat domain-containing protein-
GFD27_RS189803880883..3881176-294WP_077548940.1DUF1311 domain-containing protein-
GFD27_RS189853881688..3881951-264WP_077548939.1hypothetical protein-
GFD27_RS189903882465..3883001-537WP_139346292.1hypothetical protein-
GFD27_RS189953883176..3883787+612WP_077548937.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Antitoxin ParD

(3-70)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11104.63 Da        Isoelectric Point: 6.2182

>T288867 WP_077548944.1 NZ_LR723670:3878723-3879016 [Rhizobium flavum]
MPFSLSVRAEEDIVSIAEEGIRAFGSLVAKRYHDELFAVLELIAENPRMARERHEISPSVRIHPFKAHLVVYRINEDGTV
FVIRIRHGHEDWAGDSP

Download         Length: 294 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9471.69 Da        Isoelectric Point: 9.7747

>AT288867 WP_077548945.1 NZ_LR723670:3878469-3878723 [Rhizobium flavum]
MATMNVSLPDPMKDWVEAQAKTGRYSNVSDYVRDLIRRDQARTHKIAQMQRFVDDGITSGLGRRSKDELFAAATELAEIS
RGRA

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References