Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2357535..2358230 Replicon chromosome
Accession NZ_LR699570
Organism Mycobacterium tuberculosis variant bovis strain Mb3601 isolate 14Z005608

Toxin (Protein)


Gene name vapC Uniprot ID O53501
Locus tag MBS3601_RS10865 Protein ID WP_003410811.1
Coordinates 2357535..2357969 (-) Length 145 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TMN0
Locus tag MBS3601_RS10870 Protein ID WP_003410814.1
Coordinates 2357976..2358230 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MBS3601_RS10855 2353689..2356730 + 3042 WP_010950658.1 DEAD/DEAH box helicase -
MBS3601_RS10860 2356723..2357556 + 834 WP_003899172.1 SWIM zinc finger family protein -
MBS3601_RS10865 2357535..2357969 - 435 WP_003410811.1 type II toxin-antitoxin system VapC family toxin Toxin
MBS3601_RS10870 2357976..2358230 - 255 WP_003410814.1 antitoxin Antitoxin
MBS3601_RS10875 2358246..2358503 - 258 WP_003410816.1 hypothetical protein -
MBS3601_RS10880 2359450..2359746 + 297 WP_003410820.1 PE family protein -
MBS3601_RS10885 2359802..2360533 + 732 WP_003900467.1 PPE family protein -
MBS3601_RS10890 2361073..2361819 - 747 WP_003901330.1 proteasome subunit alpha -
MBS3601_RS10895 2361816..2362691 - 876 WP_003411023.1 proteasome subunit beta -
MBS3601_RS10900 2362688..2362882 - 195 WP_003411026.1 ubiquitin-like protein Pup -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-142)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 145 a.a.        Molecular weight: 15662.08 Da        Isoelectric Point: 7.4681

>T288846 WP_003410811.1 NZ_LR699570:c2357969-2357535 [Mycobacterium tuberculosis variant bovis]
MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLPREAAITQVADWLAAPSAV
LVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASIVSYDSDFGRFEGVRWDQPPALL

Download         Length: 435 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9417.57 Da        Isoelectric Point: 8.9912

>AT288846 WP_003410814.1 NZ_LR699570:c2358230-2357976 [Mycobacterium tuberculosis variant bovis]
MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVNLDRALQLAADLEDEELVRRQ
RRGS

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4FB09

Antitoxin

Source ID Structure
AlphaFold DB G0TMN0

References