Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/MazF(toxin)
Location 1687995..1688611 Replicon chromosome
Accession NZ_LR699570
Organism Mycobacterium tuberculosis variant bovis strain Mb3601 isolate 14Z005608

Toxin (Protein)


Gene name mazF Uniprot ID G0TJ74
Locus tag MBS3601_RS07840 Protein ID WP_003407593.1
Coordinates 1688294..1688611 (+) Length 106 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID G0TJ73
Locus tag MBS3601_RS07835 Protein ID WP_003900349.1
Coordinates 1687995..1688297 (+) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MBS3601_RS07825 1683881..1685728 + 1848 WP_003407585.1 methylmalonyl-CoA mutase small subunit -
MBS3601_RS07830 1685729..1687981 + 2253 WP_003407587.1 methylmalonyl-CoA mutase -
MBS3601_RS07835 1687995..1688297 + 303 WP_003900349.1 type II toxin-antitoxin system antitoxin MazE4 Antitoxin
MBS3601_RS07840 1688294..1688611 + 318 WP_003407593.1 type II toxin-antitoxin system toxin endoribonuclease MazF4 Toxin
MBS3601_RS07845 1688608..1689612 + 1005 WP_003407596.1 methylmalonyl Co-A mutase-associated GTPase MeaB -
MBS3601_RS07850 1689665..1690954 + 1290 WP_003407599.1 serine hydrolase -
MBS3601_RS07855 1691027..1691800 - 774 WP_003912632.1 class I SAM-dependent methyltransferase -
MBS3601_RS07860 1691858..1692049 - 192 WP_003407609.1 dodecin family protein -
MBS3601_RS07865 1692080..1692304 - 225 WP_160522526.1 NUDIX domain-containing protein -
MBS3601_RS07870 1692574..1693602 + 1029 WP_011799189.1 glycosyltransferase family 2 protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(6-99)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 11377.97 Da        Isoelectric Point: 7.9950

>T288833 WP_003407593.1 NZ_LR699570:1688294-1688611 [Mycobacterium tuberculosis variant bovis]
VNAPLRGQVYRCDLGYGAKPWLIVSNNARNRHTADVVAVRLTTTRRTIPTWVAMGPSDPLTGYVNADNIETLGKDELGDY
LGEVTPATMNKINTALATALGLPWP

Download         Length: 318 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11173.42 Da        Isoelectric Point: 9.5564

>AT288833 WP_003900349.1 NZ_LR699570:1687995-1688297 [Mycobacterium tuberculosis variant bovis]
VPFLVALSGIISGVRDHSMTVRLDQQTRQRLQDIVKGGYRSANAAIVDAINKRWEALHDEQLDAAYAAAIHDNPAYPYES
EAERSAARARRNARQQRSAQ

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5XE3
PDB 5XE2

Antitoxin

Source ID Structure
PDB 5XE3
AlphaFold DB G0TJ73

References