Detailed information of TA system TA028881

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): unclassified/Polyketide_cyc2(toxin)
• Location: 1015489..1016108
• Replicon: chromosome
• Accession: NC_020245
• Organism: Mycobacterium bovis BCG str. Korea 1168P

Toxin (Protein)

• Gene name: novel[antitoxin]
• Uniprot ID: -
• Locus tag: K60_RS04795
• Protein ID: WP_003404726.1
• Coordinates: 1015674..1016108 (+)
• Length: 145 a.a.

Antitoxin (Protein)

• Gene name: novel[toxin]
• Uniprot ID: G0TFQ5
• Locus tag: K60_RS04790
• Protein ID: WP_003404724.1
• Coordinates: 1015489..1015668 (+)
• Length: 60 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
K60_RS04780	1010962..1012542	+	1581	WP_011799139.1	serine hydrolase	-
K60_RS04785	1012539..1014932	+	2394	WP_003898639.1	cation-translocating P-type ATPase	-
K60_RS22435	1015205..1015363	+	159	WP_003404720.1	hypothetical protein	-
K60_RS04790	1015489..1015668	+	180	WP_003404724.1	antitoxin	Antitoxin
K60_RS04795	1015674..1016108	+	435	WP_003404726.1	SRPBCC family protein	Toxin
K60_RS04800	1016206..1016979	+	774	WP_003404735.1	VOC family protein	-
K60_RS04805	1017044..1017493	+	450	WP_003404738.1	hypothetical protein	-
K60_RS04810	1017628..1017858	-	231	WP_003898642.1	hypothetical protein	-
K60_RS04815	1018025..1019533	-	1509	WP_003404742.1	carotenoid oxygenase family protein	-
K60_RS04820	1019535..1020773	-	1239	WP_003404744.1	acetyl-CoA acetyltransferase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Polyketide cyclase/dehydrase (1-142)

Antitoxin

• Antitoxin Rv0909/MT0933 (4-50)

Sequences

Toxin

Protein

• Length: 145 a.a.
• Molecular weight: 15754.47 Da
• Isoelectric Point: 9.7977

>T28881 WP_003404726.1 NC_020245:1015674-1016108 [Mycobacterium tuberculosis variant bovis BCG str. Korea 1168P]
MAKLSGSIDVPLPPEEAWMHASDLTRYREWLTIHKVWRSKLPEVLEKGTVVESYVEVKGMPNRIKWTIVRYKPPEGMTLN
GDGVGGVKVKLIAKVAPKEHGSVVSFDVHLGGPALLGPIGMIVAAALRADIRESLQNFVTVFAG

Nucleotide

• Length: 435 bp

>T28881 NC_020245:1015674-1016108 [Mycobacterium tuberculosis variant bovis BCG str. Korea 1168P]
ATGGCGAAACTGTCCGGATCCATCGACGTACCGCTGCCACCGGAGGAAGCCTGGATGCACGCCTCCGATCTGACTCGTTA
CCGAGAGTGGCTGACCATCCACAAGGTATGGCGCAGCAAGTTGCCCGAAGTGCTCGAGAAGGGCACGGTCGTCGAGTCGT
ATGTCGAGGTCAAGGGCATGCCCAACCGGATCAAGTGGACGATCGTGCGGTACAAACCCCCGGAGGGCATGACGCTCAAC
GGCGACGGTGTGGGTGGTGTCAAAGTCAAGCTGATCGCTAAGGTAGCGCCGAAAGAGCACGGCTCCGTCGTCAGCTTCGA
TGTGCACCTCGGCGGCCCGGCCCTGCTCGGGCCGATCGGCATGATCGTCGCCGCTGCATTGCGAGCCGACATCCGCGAAT
CGCTGCAGAACTTCGTCACGGTGTTTGCCGGCTGA

Antitoxin

Protein

• Length: 60 a.a.
• Molecular weight: 6394.06 Da
• Isoelectric Point: 4.3059

>AT28881 WP_003404724.1 NC_020245:1015489-1015668 [Mycobacterium tuberculosis variant bovis BCG str. Korea 1168P]
MGILDKVKNLLSQNADKVETVINKAGEFVDEQTQGNYSDAIHKLQDAASNVVGMSDQQS

Nucleotide

• Length: 180 bp

>AT28881 NC_020245:1015489-1015668 [Mycobacterium tuberculosis variant bovis BCG str. Korea 1168P]
ATGGGAATCCTGGACAAGGTAAAGAACCTGCTGTCGCAGAACGCCGACAAGGTCGAGACGGTGATCAACAAAGCGGGCGA
ATTCGTCGACGAGCAGACGCAAGGCAATTATTCTGACGCCATCCACAAGCTGCAGGACGCGGCCAGCAACGTCGTCGGCA
TGAGCGACCAGCAGAGCTAG

Structures

Antitoxin

• AlphaFold DB: G0TFQ5