Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1680629..1680864 Replicon chromosome
Accession NZ_LR699014
Organism Citrobacter werkmanii isolate MGYG-HGUT-02535

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1680755..1680858 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1680629..1680864 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FYC27_RS08090 1677175..1677837 - 663 WP_096756686.1 exodeoxyribonuclease X -
FYC27_RS08095 1677861..1678517 - 657 WP_096756687.1 carbon-nitrogen hydrolase family protein -
FYC27_RS08100 1678624..1678848 - 225 WP_096756688.1 DNA polymerase III subunit theta -
FYC27_RS08105 1678993..1679367 + 375 WP_096756689.1 CopC domain-containing protein YobA -
FYC27_RS08110 1679372..1680244 + 873 WP_096756690.1 copper homeostasis membrane protein CopD -
FYC27_RS08115 1680261..1680599 + 339 WP_096756691.1 YebY family protein -
- 1680629..1680864 - 236 - - Antitoxin
- 1680755..1680858 + 104 - - Toxin
FYC27_RS08120 1681013..1681654 + 642 WP_096756692.1 protein-serine/threonine phosphatase -
FYC27_RS08125 1681655..1681846 - 192 WP_045444034.1 YebW family protein -
FYC27_RS08130 1681949..1682185 - 237 WP_161959030.1 DUF1480 family protein -
FYC27_RS08135 1682286..1683674 - 1389 WP_197737708.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T288781 NZ_LR699014:1680755-1680858 [Citrobacter werkmanii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 236 bp

>AT288781 NZ_LR699014:c1680864-1680629 [Citrobacter werkmanii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References