Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | tad-ata/COG5606-COG4679 |
Location | 4980720..4981389 | Replicon | chromosome |
Accession | NZ_LR699009 | ||
Organism | Pluralibacter gergoviae isolate MGYG-HGUT-02520 |
Toxin (Protein)
Gene name | tad | Uniprot ID | - |
Locus tag | FYC31_RS23420 | Protein ID | WP_071883348.1 |
Coordinates | 4980720..4981082 (+) | Length | 121 a.a. |
Antitoxin (Protein)
Gene name | ata | Uniprot ID | - |
Locus tag | FYC31_RS23425 | Protein ID | WP_043082499.1 |
Coordinates | 4981072..4981389 (+) | Length | 106 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FYC31_RS23400 | 4976795..4978345 | + | 1551 | WP_045287224.1 | membrane-bound lytic murein transglycosylase MltF | - |
FYC31_RS23405 | 4978342..4978803 | - | 462 | WP_196300365.1 | tRNA adenosine(34) deaminase TadA | - |
FYC31_RS23410 | 4978908..4979543 | - | 636 | WP_048254444.1 | phosphatidylglycerophosphatase C | - |
FYC31_RS23415 | 4979788..4980636 | + | 849 | WP_048254442.1 | MurR/RpiR family transcriptional regulator | - |
FYC31_RS23420 | 4980720..4981082 | + | 363 | WP_071883348.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
FYC31_RS23425 | 4981072..4981389 | + | 318 | WP_043082499.1 | helix-turn-helix domain-containing protein | Antitoxin |
FYC31_RS23430 | 4981569..4981829 | + | 261 | WP_048254441.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
FYC31_RS23435 | 4981826..4982206 | - | 381 | WP_043082497.1 | holo-ACP synthase | - |
FYC31_RS23440 | 4982206..4982937 | - | 732 | WP_043082496.1 | pyridoxine 5'-phosphate synthase | - |
FYC31_RS23445 | 4982958..4983683 | - | 726 | WP_043082495.1 | DNA repair protein RecO | - |
FYC31_RS23450 | 4983695..4984600 | - | 906 | WP_045287229.1 | GTPase Era | - |
FYC31_RS23455 | 4984597..4985277 | - | 681 | WP_043082493.1 | ribonuclease III | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 121 a.a. Molecular weight: 13417.17 Da Isoelectric Point: 9.8076
>T288769 WP_071883348.1 NZ_LR699009:4980720-4981082 [Pluralibacter gergoviae]
ITQKSLYWVGSSRKDLQSLPDDVQDVFGYALYLAQTGSKHSQSKVLKGFGSAGVLEVVEQFFGSTYRAVYTVKFADAVYV
LHAFQKKSSSGIATPKCDLNKIHERLKAAEDHARRAHHER
ITQKSLYWVGSSRKDLQSLPDDVQDVFGYALYLAQTGSKHSQSKVLKGFGSAGVLEVVEQFFGSTYRAVYTVKFADAVYV
LHAFQKKSSSGIATPKCDLNKIHERLKAAEDHARRAHHER
Download Length: 363 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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