Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4074834..4074974 | Replicon | chromosome |
| Accession | NZ_LR699009 | ||
| Organism | Pluralibacter gergoviae isolate MGYG-HGUT-02520 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4074836..4074939 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4074834..4074974 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYC31_RS19230 | 4072425..4073816 | + | 1392 | WP_048252977.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FYC31_RS19235 | 4073928..4074167 | + | 240 | WP_043083371.1 | YebV family protein | - |
| FYC31_RS19240 | 4074260..4074451 | + | 192 | WP_043083370.1 | YebW family protein | - |
| FYC31_RS19245 | 4074537..4074680 | + | 144 | WP_144244730.1 | Ecr family regulatory small membrane protein | - |
| - | 4074834..4074974 | + | 141 | - | - | Antitoxin |
| - | 4074836..4074939 | - | 104 | - | - | Toxin |
| FYC31_RS19250 | 4075096..4075434 | - | 339 | WP_043083367.1 | YebY family protein | - |
| FYC31_RS19255 | 4075450..4076319 | - | 870 | WP_048252908.1 | copper homeostasis membrane protein CopD | - |
| FYC31_RS19260 | 4076323..4076697 | - | 375 | WP_043083365.1 | CopC domain-containing protein YobA | - |
| FYC31_RS19265 | 4076836..4077066 | + | 231 | WP_045289165.1 | DNA polymerase III subunit theta | - |
| FYC31_RS19270 | 4077151..4077840 | + | 690 | WP_048252907.1 | carbon-nitrogen hydrolase family protein | - |
| FYC31_RS19275 | 4077868..4078527 | + | 660 | WP_048252906.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T288762 NZ_LR699009:c4074939-4074836 [Pluralibacter gergoviae]
GGCAAGGCGATTGAGCCTTCATCAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGACTCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTTCATCAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGACTCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT288762 NZ_LR699009:4074834-4074974 [Pluralibacter gergoviae]
ATAAAAAGAGACCGAATACGAGTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTGATGAAGGCTCAATCGCCTTGCCTTATAAGAATAGATGACCGTGGCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGAGTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTGATGAAGGCTCAATCGCCTTGCCTTATAAGAATAGATGACCGTGGCAGGTTTTCCAGT
