Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3329662..3329805 | Replicon | chromosome |
| Accession | NZ_LR699006 | ||
| Organism | Citrobacter freundii isolate MGYG-HGUT-02495 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3329697..3329800 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3329662..3329805 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYB80_RS15765 | 3326109..3326771 | - | 663 | WP_043016687.1 | exodeoxyribonuclease X | - |
| FYB80_RS15770 | 3326795..3327451 | - | 657 | WP_043016686.1 | carbon-nitrogen hydrolase family protein | - |
| FYB80_RS15775 | 3327558..3327788 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| FYB80_RS15780 | 3327932..3328306 | + | 375 | WP_047410546.1 | CopC domain-containing protein YobA | - |
| FYB80_RS15785 | 3328310..3329182 | + | 873 | WP_043016685.1 | copper homeostasis membrane protein CopD | - |
| FYB80_RS15790 | 3329203..3329541 | + | 339 | WP_043016684.1 | YebY family protein | - |
| - | 3329662..3329805 | - | 144 | - | - | Antitoxin |
| - | 3329697..3329800 | + | 104 | - | - | Toxin |
| FYB80_RS15795 | 3330110..3331366 | + | 1257 | WP_047410548.1 | hypothetical protein | - |
| FYB80_RS15800 | 3331468..3332109 | + | 642 | WP_047410550.1 | protein-serine/threonine phosphatase | - |
| FYB80_RS15805 | 3332110..3332301 | - | 192 | WP_016152779.1 | YebW family protein | - |
| FYB80_RS15810 | 3332404..3332640 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| FYB80_RS15815 | 3332741..3334129 | - | 1389 | WP_043017932.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T288731 NZ_LR699006:3329697-3329800 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT288731 NZ_LR699006:c3329805-3329662 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
