Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 1042050..1042585 Replicon chromosome
Accession NZ_LR698987
Organism Leminorella richardii isolate MGYG-HGUT-02385

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag FX055_RS04885 Protein ID WP_111739580.1
Coordinates 1042298..1042585 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FX055_RS04880 Protein ID WP_111739579.1
Coordinates 1042050..1042301 (+) Length 84 a.a.

Genomic Context

FX055_RS04855FX055_RS04860FX055_RS04865FX055_RS04870FX055_RS04875FX055_RS04880FX055_RS04885FX055_RS04900FX055_RS04890FX055_RS04895
Location: 1037225..1038247 (1023 bp)
Type: Others
Protein ID: WP_170126490.1
Location: 1038250..1039083 (834 bp)
Type: Others
Protein ID: WP_111741998.1
Location: 1039083..1039958 (876 bp)
Type: Others
Protein ID: WP_111739576.1
Location: 1039948..1041042 (1095 bp)
Type: Others
Protein ID: WP_111739577.1
Location: 1041071..1041958 (888 bp)
Type: Others
Protein ID: WP_111739578.1
Location: 1042050..1042301 (252 bp)
Type: Antitoxin
Protein ID: WP_111739579.1
Location: 1042298..1042585 (288 bp)
Type: Toxin
Protein ID: WP_111739580.1
Location: 1046089..1046765 (677 bp)
Type: Others
Protein ID: Protein_966
Location: 1042714..1044678 (1965 bp)
Type: Others
Protein ID: WP_111739581.1
Location: 1044683..1045873 (1191 bp)
Type: Others
Protein ID: WP_111739582.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FX055_RS048551037225..1038247+1023WP_170126490.1thiosulfate ABC transporter substrate-binding protein CysP-
FX055_RS048601038250..1039083+834WP_111741998.1sulfate/thiosulfate ABC transporter permease CysT-
FX055_RS048651039083..1039958+876WP_111739576.1sulfate/thiosulfate ABC transporter permease CysW-
FX055_RS048701039948..1041042+1095WP_111739577.1sulfate/thiosulfate ABC transporter ATP-binding protein CysA-
FX055_RS048751041071..1041958+888WP_111739578.1cysteine synthase CysM-
FX055_RS048801042050..1042301+252WP_111739579.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
FX055_RS048851042298..1042585+288WP_111739580.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FX055_RS048901042714..1044678-1965WP_111739581.1MacB family efflux pump subunit-
FX055_RS048951044683..1045873-1191WP_111739582.1efflux RND transporter periplasmic adaptor subunit-
FX055_RS049001046089..1046765+677Protein_966response regulator transcription factor-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11055.07 Da        Isoelectric Point: 10.4228

>T288709 WP_111739580.1 NZ_LR698987:1042298-1042585 [Leminorella richardii]
MSYAVKFRRDALKEWQKLDKAIQQQFAKKLKKCCEEPHLPAARLSGMPDCYKIKLRSSGFRLVYQVINDELLVVVVAVGK
RERSGVYHLASERMR

Download         Length: 288 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9170.52 Da        Isoelectric Point: 4.1947

>AT288709 WP_111739579.1 NZ_LR698987:1042050-1042301 [Leminorella richardii]
MPNLILSDISASVSELKKNPMATVNAGAGYPVAILNRNQPAFYCVPAELYEQILDALDEHELVKLVKERQGQPLVEVDLD
SYL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References