288661

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /Xre(antitoxin)
Location 4479555..4480813 Replicon chromosome
Accession NZ_LR657304
Organism Pseudomonas aeruginosa PAK

Toxin (Protein)


Gene name - Uniprot ID Q9I4U4
Locus tag PAKAF_RS20690 Protein ID WP_003112528.1
Coordinates 4479555..4480310 (-) Length 252 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID V6AJU7
Locus tag PAKAF_RS20695 Protein ID WP_003086329.1
Coordinates 4480445..4480813 (-) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PAKAF_RS20680 4474727..4477270 + 2544 WP_016253747.1 acyl-homoserine-lactone acylase QuiP -
PAKAF_RS20685 4477425..4478786 - 1362 WP_003081943.1 DNA recombination protein RmuC -
PAKAF_RS20690 4479555..4480310 - 756 WP_003112528.1 RES family NAD+ phosphorylase Toxin
PAKAF_RS20695 4480445..4480813 - 369 WP_003086329.1 DUF2384 domain-containing protein Antitoxin
PAKAF_RS20700 4480886..4482172 - 1287 WP_003163134.1 FAD-binding oxidoreductase -
PAKAF_RS20705 4482228..4483817 - 1590 WP_003123191.1 aldehyde dehydrogenase family protein -
PAKAF_RS20710 4483896..4484372 + 477 WP_003112531.1 hypothetical protein -
PAKAF_RS20715 4484375..4484650 - 276 WP_010792073.1 zinc ribbon domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(63-207)

Antitoxin

Cro/C1-type helix-turn-helix domain

(23-47)


Sequences

Toxin        


Download         Length: 252 a.a.        Molecular weight: 28278.42 Da        Isoelectric Point: 7.7294

>T288661 WP_003112528.1 NZ_LR657304:c4480310-4479555 [Pseudomonas aeruginosa PAK]
VSEIWRQCKGERHIRPLQGRLVRLVESQEQVATLQLVDTLEEQALLEELLESSKPPVPADAEPLHYLLKTPFRYPPLRWG
SRFGRRHEPSLFYAALKLETAMAESAYYRCVLWSGMVVPPPSGRILSEHASFEAGWKVERGIRLQAPPFSDHEAALTDIA
DYRAPQELGSAMRSAGVQAFEYRSARCPERGCNVALFTPAAFTEKRPRNLTPWLCETTAGYVAFKPAHVPGSPKIFSWEL
FLVDGKLPHPA

Download         Length: 756 bp

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 13367.63 Da        Isoelectric Point: 9.9874

>AT288661 WP_003086329.1 NZ_LR657304:c4480813-4480445 [Pseudomonas aeruginosa PAK]
MSALIKERPSADAVLAKAVLAAREQLGLTQLELAGIVGVDRSAISRWKTQGLRVDSKTGELALLLVRVYRALYALFGGQQ
EDMRHFLRTPNHHLAGEPLALMGQVQGLVHVLEYLDAIRGKV

Download         Length: 369 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB Q9I4U4

Antitoxin

Source ID Structure
AlphaFold DB V6AJU7

References