Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2041764..2041906 | Replicon | chromosome |
| Accession | NZ_LR595855 | ||
| Organism | Raoultella terrigena strain NCTC9189 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2041799..2041902 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2041764..2041906 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FQU09_RS09740 | 2036876..2038936 | + | 2061 | WP_143716227.1 | oligopeptidase B | - |
| FQU09_RS09745 | 2038946..2039605 | - | 660 | WP_041146220.1 | exodeoxyribonuclease X | - |
| FQU09_RS09750 | 2039684..2039914 | - | 231 | WP_041146219.1 | DNA polymerase III subunit theta | - |
| FQU09_RS09755 | 2040040..2040414 | + | 375 | WP_143966833.1 | CopC domain-containing protein YobA | - |
| FQU09_RS09760 | 2040418..2041287 | + | 870 | WP_076947338.1 | copper homeostasis membrane protein CopD | - |
| FQU09_RS09765 | 2041304..2041642 | + | 339 | WP_041146216.1 | YebY family protein | - |
| - | 2041764..2041906 | - | 143 | - | - | Antitoxin |
| - | 2041799..2041902 | + | 104 | - | - | Toxin |
| FQU09_RS09770 | 2042250..2042393 | - | 144 | WP_141334947.1 | Ecr family regulatory small membrane protein | - |
| FQU09_RS09775 | 2042499..2043458 | - | 960 | WP_143966834.1 | VirK/YbjX family protein | - |
| FQU09_RS09780 | 2043622..2044275 | + | 654 | WP_143966835.1 | protein-serine/threonine phosphatase | - |
| FQU09_RS09785 | 2044272..2044463 | - | 192 | WP_041146213.1 | YebW family protein | - |
| FQU09_RS09790 | 2044561..2044800 | - | 240 | WP_045859185.1 | YebV family protein | - |
| FQU09_RS09795 | 2044916..2046349 | - | 1434 | WP_143966836.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T288628 NZ_LR595855:2041799-2041902 [Raoultella terrigena]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT288628 NZ_LR595855:c2041906-2041764 [Raoultella terrigena]
AGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGT
AGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGT
