Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2155660..2155828 | Replicon | chromosome |
| Accession | NZ_LR594038 | ||
| Organism | Klebsiella grimontii strain NCTC9146 substr. serovar casular | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2155718..2155821 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2155660..2155828 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL39_RS10315 | 2150787..2152847 | + | 2061 | WP_049089573.1 | oligopeptidase B | - |
| FGL39_RS10320 | 2152854..2153513 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| FGL39_RS10325 | 2153592..2153822 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| FGL39_RS10330 | 2153958..2154332 | + | 375 | WP_049089572.1 | CopC domain-containing protein YobA | - |
| FGL39_RS10335 | 2154337..2155206 | + | 870 | WP_049089571.1 | copper homeostasis membrane protein CopD | - |
| FGL39_RS10340 | 2155223..2155561 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2155660..2155828 | - | 169 | - | - | Antitoxin |
| - | 2155718..2155821 | + | 104 | - | - | Toxin |
| FGL39_RS10345 | 2155946..2156905 | - | 960 | WP_049085573.1 | spore coat U domain-containing protein | - |
| FGL39_RS10350 | 2156920..2159250 | - | 2331 | WP_049089570.1 | fimbrial biogenesis outer membrane usher protein | - |
| FGL39_RS10355 | 2159253..2160017 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| FGL39_RS10360 | 2160036..2160554 | - | 519 | WP_049099811.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T288517 NZ_LR594038:2155718-2155821 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT288517 NZ_LR594038:c2155828-2155660 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
