Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 5269947..5270488 Replicon chromosome
Accession NZ_LR590482
Organism Pseudomonas synxantha strain NCTC10696

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag FGL41_RS24390 Protein ID WP_082636603.1
Coordinates 5269947..5270222 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A921NKV7
Locus tag FGL41_RS24395 Protein ID WP_032893597.1
Coordinates 5270222..5270488 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FGL41_RS24370 5265536..5266429 + 894 WP_057021588.1 glycine betaine ABC transporter substrate-binding protein -
FGL41_RS24375 5266442..5267095 + 654 WP_034118069.1 ABC transporter permease -
FGL41_RS24380 5267092..5268249 + 1158 WP_043048518.1 ABC transporter ATP-binding protein -
FGL41_RS24385 5268720..5269883 + 1164 WP_003188470.1 type III PLP-dependent enzyme -
FGL41_RS24390 5269947..5270222 - 276 WP_082636603.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FGL41_RS24395 5270222..5270488 - 267 WP_032893597.1 ribbon-helix-helix domain-containing protein Antitoxin
FGL41_RS24400 5270632..5271390 - 759 WP_057021589.1 sel1 repeat family protein -
FGL41_RS24405 5271392..5272072 - 681 WP_057021590.1 Fe2+-dependent dioxygenase -
FGL41_RS24410 5272278..5274563 + 2286 WP_057021591.1 TonB-dependent siderophore receptor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(9-45)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10785.36 Da        Isoelectric Point: 8.5145

>T288499 WP_082636603.1 NZ_LR590482:c5270222-5269947 [Pseudomonas synxantha]
MELRWTSKALSDLARLYDFLSVVNREAAARIVQSLSQAPDALLGNPRIGERIEEFSPRDVRRLLVGHYEMRYEIQQSTLY
ILRLWHVREDR

Download         Length: 276 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9728.00 Da        Isoelectric Point: 4.7640

>AT288499 WP_032893597.1 NZ_LR590482:c5270488-5270222 [Pseudomonas synxantha]
MGAETKVMTAHIPTALAQKVDQMAARMDRSRGWVVKQALADWVDQEEERSRLTLEAMADVDAGRVIDHQAVQAWADSLST
DSPLPVPR

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References