Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1840229..1840374 | Replicon | chromosome |
| Accession | NZ_LR588412 | ||
| Organism | Klebsiella pneumoniae strain NCTC9157 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1840265..1840367 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1840229..1840374 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL27_RS09000 | 1835359..1837419 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FGL27_RS09005 | 1837423..1838082 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FGL27_RS09010 | 1838161..1838391 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FGL27_RS09015 | 1838504..1838878 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FGL27_RS09020 | 1838882..1839751 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| FGL27_RS09025 | 1839768..1840106 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1840229..1840374 | - | 146 | - | - | Antitoxin |
| - | 1840265..1840367 | + | 103 | - | - | Toxin |
| FGL27_RS25690 | 1840742..1840885 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FGL27_RS09035 | 1840990..1841958 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FGL27_RS09040 | 1842115..1842768 | + | 654 | WP_080851225.1 | protein-serine/threonine phosphatase | - |
| FGL27_RS09045 | 1842765..1842956 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FGL27_RS09050 | 1843054..1843293 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FGL27_RS09055 | 1843409..1844842 | - | 1434 | WP_138074245.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T288452 NZ_LR588412:1840265-1840367 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT288452 NZ_LR588412:c1840374-1840229 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
