Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4964730..4964877 | Replicon | chromosome |
| Accession | NZ_LR588411 | ||
| Organism | Klebsiella quasipneumoniae strain NCTC9170 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4964734..4964836 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4964730..4964877 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL28_RS24355 | 4960246..4961679 | + | 1434 | WP_053810194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FGL28_RS24360 | 4961796..4962035 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FGL28_RS24365 | 4962133..4962324 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FGL28_RS24370 | 4962321..4962974 | - | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| FGL28_RS24375 | 4963131..4964099 | + | 969 | WP_122543197.1 | VirK/YbjX family protein | - |
| FGL28_RS25295 | 4964203..4964346 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 4964730..4964877 | + | 148 | - | - | Antitoxin |
| - | 4964734..4964836 | - | 103 | - | - | Toxin |
| FGL28_RS24385 | 4964995..4965333 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FGL28_RS24390 | 4965350..4966219 | - | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| FGL28_RS24395 | 4966223..4966597 | - | 375 | WP_064149717.1 | CopC domain-containing protein YobA | - |
| FGL28_RS24400 | 4966710..4966940 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FGL28_RS24405 | 4967019..4967678 | + | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| FGL28_RS24410 | 4967682..4969742 | - | 2061 | WP_004203388.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T288445 NZ_LR588411:c4964836-4964734 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT288445 NZ_LR588411:4964730-4964877 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
