Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | hipBA/HipA-couple_hipB |
Location | 130988..132780 | Replicon | chromosome |
Accession | NZ_LR588411 | ||
Organism | Klebsiella quasipneumoniae strain NCTC9170 |
Toxin (Protein)
Gene name | hipA | Uniprot ID | - |
Locus tag | FGL28_RS00565 | Protein ID | WP_122543299.1 |
Coordinates | 130988..132337 (+) | Length | 450 a.a. |
Antitoxin (Protein)
Gene name | hipB | Uniprot ID | - |
Locus tag | FGL28_RS00570 | Protein ID | WP_122543288.1 |
Coordinates | 132334..132780 (+) | Length | 149 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FGL28_RS00540 | 126474..127406 | - | 933 | WP_014907191.1 | tRNA dihydrouridine(16) synthase DusC | - |
FGL28_RS00545 | 127764..128168 | + | 405 | WP_004201620.1 | CidA/LrgA family protein | - |
FGL28_RS00550 | 128158..128853 | + | 696 | WP_004201621.1 | CidB/LrgB family autolysis modulator | - |
FGL28_RS00555 | 128982..129866 | + | 885 | WP_004201623.1 | cytidine deaminase | - |
FGL28_RS00560 | 130142..130873 | + | 732 | WP_008804033.1 | outer membrane permeability protein SanA | - |
FGL28_RS00565 | 130988..132337 | + | 1350 | WP_122543299.1 | type II toxin-antitoxin system HipA family toxin | Toxin |
FGL28_RS00570 | 132334..132780 | + | 447 | WP_122543288.1 | helix-turn-helix domain-containing protein | Antitoxin |
FGL28_RS00575 | 132822..133832 | - | 1011 | WP_002912871.1 | galactose/methyl galactoside ABC transporter permease MglC | - |
FGL28_RS00580 | 133848..135368 | - | 1521 | WP_004201625.1 | galactose/methyl galactoside ABC transporter ATP-binding protein MglA | - |
FGL28_RS00585 | 135487..136485 | - | 999 | WP_004201626.1 | galactose/glucose ABC transporter substrate-binding protein MglB | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 450 a.a. Molecular weight: 51020.92 Da Isoelectric Point: 4.8038
>T288440 WP_122543299.1 NZ_LR588411:130988-132337 [Klebsiella quasipneumoniae]
METLTVQAFLNAEWQDIALIKFPGSEQGDWFTTQIDYLTDYAIDFLERDDYHAVSLNHPVSLYFEDHGNPGWLRFIDDII
PSGASRRYWVNFLDISELPQGQQNFILLKFGTMSPVGNLRIKDSVPDWDSLASSKTFSVTDVMNRASDFLDYAQERGAAA
GGATGAGGEAPKLLLRCSKRQEIWIDTWQNEPGSDDLYYLVKYPRGSRSEVDCNILRAEFHYYHELTAMGFSTIPVDNMR
LEEGLHYPSLWLPRFDIRRDGDGRIMRLGMESVYSLLQKAPATILDHETTLRILIEKIASSHMVRVQNYRFDVQGFIIDW
VRRDLLNIIFGNSDNHGRNTAFMKADNEITLAPIYDFAPMKADPEGIPRTMKWSLACESGGEYNFGAIAQALAEWIAPDT
LLNALRETASQLIDLPSRLKARGVPVQILEMPSIGFKFIPDKLARWGLL
METLTVQAFLNAEWQDIALIKFPGSEQGDWFTTQIDYLTDYAIDFLERDDYHAVSLNHPVSLYFEDHGNPGWLRFIDDII
PSGASRRYWVNFLDISELPQGQQNFILLKFGTMSPVGNLRIKDSVPDWDSLASSKTFSVTDVMNRASDFLDYAQERGAAA
GGATGAGGEAPKLLLRCSKRQEIWIDTWQNEPGSDDLYYLVKYPRGSRSEVDCNILRAEFHYYHELTAMGFSTIPVDNMR
LEEGLHYPSLWLPRFDIRRDGDGRIMRLGMESVYSLLQKAPATILDHETTLRILIEKIASSHMVRVQNYRFDVQGFIIDW
VRRDLLNIIFGNSDNHGRNTAFMKADNEITLAPIYDFAPMKADPEGIPRTMKWSLACESGGEYNFGAIAQALAEWIAPDT
LLNALRETASQLIDLPSRLKARGVPVQILEMPSIGFKFIPDKLARWGLL
Download Length: 1350 bp
Antitoxin
Download Length: 149 a.a. Molecular weight: 16538.25 Da Isoelectric Point: 10.5137
>AT288440 WP_122543288.1 NZ_LR588411:132334-132780 [Klebsiella quasipneumoniae]
MKTLNKKETEIQNTLARLRAENPPSLPATEVTATEKKARSEISRQRVSTGLKKVKTIDRQVVIHAIIHDIMLGAISQGEA
LKKLRVEVLGLRQDEYARLVDVSRKTLSDVENDKGNYSAEIINKIFKPFGLETGLVPISKTLISSLFK
MKTLNKKETEIQNTLARLRAENPPSLPATEVTATEKKARSEISRQRVSTGLKKVKTIDRQVVIHAIIHDIMLGAISQGEA
LKKLRVEVLGLRQDEYARLVDVSRKTLSDVENDKGNYSAEIINKIFKPFGLETGLVPISKTLISSLFK
Download Length: 447 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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