Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2164973..2165244 | Replicon | chromosome |
| Accession | NZ_LR536431 | ||
| Organism | Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2165103..2165206 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2164973..2165244 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4Z82_RS10660 | 2161528..2162190 | - | 663 | WP_000944266.1 | exodeoxyribonuclease X | - |
| E4Z82_RS10665 | 2162214..2162870 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| E4Z82_RS10670 | 2162972..2163202 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E4Z82_RS10675 | 2163341..2163715 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E4Z82_RS10680 | 2163719..2164591 | + | 873 | WP_000879301.1 | copper homeostasis membrane protein CopD | - |
| E4Z82_RS10685 | 2164604..2164945 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2164973..2165244 | - | 272 | - | - | Antitoxin |
| - | 2165103..2165206 | + | 104 | - | - | Toxin |
| E4Z82_RS10690 | 2165341..2165997 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| E4Z82_RS10695 | 2165998..2166189 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E4Z82_RS10700 | 2166294..2166530 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E4Z82_RS10705 | 2166648..2168087 | - | 1440 | WP_024226338.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2091322..2186176 | 94854 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T288409 NZ_LR536431:2165103-2165206 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT288409 NZ_LR536431:c2165244-2164973 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
