Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3814788..3815406 Replicon chromosome
Accession NZ_LR536430
Organism Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag E4Z69_RS19000 Protein ID WP_001291435.1
Coordinates 3814788..3815006 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag E4Z69_RS19005 Protein ID WP_000344800.1
Coordinates 3815032..3815406 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E4Z69_RS18965 3810077..3810649 + 573 WP_000779831.1 YbaY family lipoprotein -
E4Z69_RS18970 3810680..3810991 - 312 WP_000409911.1 MGMT family protein -
E4Z69_RS18980 3811370..3811723 + 354 WP_000878140.1 DUF1428 domain-containing protein -
E4Z69_RS18985 3811765..3813315 - 1551 WP_001514985.1 cyclic-guanylate-specific phosphodiesterase PdeB -
E4Z69_RS18990 3813479..3813949 - 471 WP_000136192.1 YlaC family protein -
E4Z69_RS18995 3814065..3814616 - 552 WP_000102564.1 maltose O-acetyltransferase -
E4Z69_RS19000 3814788..3815006 - 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
E4Z69_RS19005 3815032..3815406 - 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
E4Z69_RS19010 3815952..3819101 - 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
E4Z69_RS19015 3819124..3820317 - 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T288400 WP_001291435.1 NZ_LR536430:c3815006-3814788 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT288400 WP_000344800.1 NZ_LR536430:c3815406-3815032 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References