Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3186487..3186758 | Replicon | chromosome |
| Accession | NZ_LR217818 | ||
| Organism | Escherichia coli strain NCTC86 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3186525..3186628 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3186487..3186758 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4V11_RS15705 | 3183644..3185083 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E4V11_RS15710 | 3185201..3185437 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E4V11_RS15715 | 3185542..3185733 | + | 192 | WP_000457842.1 | YebW family protein | - |
| E4V11_RS15720 | 3185734..3186390 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3186487..3186758 | + | 272 | - | - | Antitoxin |
| - | 3186525..3186628 | - | 104 | - | - | Toxin |
| E4V11_RS15725 | 3186786..3187127 | - | 342 | WP_000976476.1 | YebY family protein | - |
| E4V11_RS15730 | 3187140..3188012 | - | 873 | WP_066009214.1 | copper homeostasis membrane protein CopD | - |
| E4V11_RS15735 | 3188016..3188390 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E4V11_RS15740 | 3188529..3188759 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E4V11_RS15745 | 3188861..3189517 | + | 657 | WP_066009212.1 | carbon-nitrogen hydrolase family protein | - |
| E4V11_RS15750 | 3189541..3190203 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T288362 NZ_LR217818:c3186628-3186525 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT288362 NZ_LR217818:3186487-3186758 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
