Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/Txe-RelB
Location 2318267..2318796 Replicon chromosome
Accession NZ_LR135357
Organism Enterococcus faecium isolate E7948

Toxin (Protein)


Gene name relE Uniprot ID Q3XX67
Locus tag EQB40_RS11775 Protein ID WP_002296560.1
Coordinates 2318267..2318533 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A829F3T0
Locus tag EQB40_RS11780 Protein ID WP_002296559.1
Coordinates 2318533..2318796 (-) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EQB40_RS11745 2313667..2314071 - 405 WP_002287522.1 IS200/IS605-like element ISEfa4 family transposase -
EQB40_RS11750 2314229..2314810 + 582 Protein_2179 CBS domain-containing protein -
EQB40_RS11755 2314814..2315455 + 642 WP_002293405.1 ABC transporter permease -
EQB40_RS11760 2315452..2316369 + 918 WP_002296564.1 osmoprotectant ABC transporter substrate-binding protein -
EQB40_RS11765 2316366..2317037 + 672 WP_002302663.1 ABC transporter permease -
EQB40_RS11770 2317578..2318066 - 489 WP_002296561.1 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase -
EQB40_RS11775 2318267..2318533 - 267 WP_002296560.1 Txe/YoeB family addiction module toxin Toxin
EQB40_RS11780 2318533..2318796 - 264 WP_002296559.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
EQB40_RS11790 2319272..2319457 + 186 WP_002296558.1 transcriptional regulator -
EQB40_RS11795 2319599..2321422 - 1824 WP_002294202.1 APC family permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element erm(T) / tet(L) / tet(M) bopD / lap 2198658..2349898 151240


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(9-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(5-69)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10660.13 Da        Isoelectric Point: 9.9931

>T288162 WP_002296560.1 NZ_LR135357:c2318533-2318267 [Enterococcus faecium]
MSNYTVAIKNSAKVDLRKIKQTNLKKQFEEVIQTLKEDPYMPTQSFEKLRPTHEGRYSRRLNRQHRVVYKVDEENKVVEI
YSAWTHYE

Download         Length: 267 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 10046.05 Da        Isoelectric Point: 4.1207

>AT288162 WP_002296559.1 NZ_LR135357:c2318796-2318533 [Enterococcus faecium]
MANTTMNPSTARKNFYQLLKEVNENHTEIEIISDRSGNNAVLIGLEDWRAIQETLFLEQTGTLDKVRDREKDDSSFTNID
DIDWEAL

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829FCW8

Antitoxin

Source ID Structure
AlphaFold DB A0A829F3T0

References