Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 693736..693882 | Replicon | chromosome |
| Accession | NC_020181 | ||
| Organism | Enterobacter aerogenes EA1509E | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 693771..693874 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 693736..693882 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAEROS_RS04155 | 688845..690905 | + | 2061 | WP_041165554.1 | oligopeptidase B | - |
| EAEROS_RS04160 | 690908..691567 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| EAEROS_RS04165 | 691647..691877 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| EAEROS_RS04170 | 692012..692386 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| EAEROS_RS04175 | 692390..693259 | + | 870 | WP_015366009.1 | copper homeostasis membrane protein CopD | - |
| EAEROS_RS04180 | 693273..693614 | + | 342 | WP_015366010.1 | YebY family protein | - |
| - | 693736..693882 | - | 147 | - | - | Antitoxin |
| - | 693771..693874 | + | 104 | - | - | Toxin |
| EAEROS_RS04185 | 694002..694949 | - | 948 | WP_032706245.1 | spore coat U domain-containing protein | - |
| EAEROS_RS04190 | 694968..697292 | - | 2325 | WP_032705949.1 | fimbrial biogenesis outer membrane usher protein | - |
| EAEROS_RS04195 | 697295..698044 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| EAEROS_RS04200 | 698062..698580 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T28810 NC_020181:693771-693874 [Klebsiella aerogenes EA1509E]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT28810 NC_020181:c693882-693736 [Klebsiella aerogenes EA1509E]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
