Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RelE-RHH
Location 982842..983401 Replicon chromosome
Accession NZ_LR134529
Organism Bartonella vinsonii strain NCTC12905

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag EL291_RS04395 Protein ID WP_126603188.1
Coordinates 982842..983114 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag EL291_RS04400 Protein ID WP_126603190.1
Coordinates 983111..983401 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL291_RS04390 981638..982591 - 954 WP_126603186.1 DUF3987 domain-containing protein -
EL291_RS04395 982842..983114 - 273 WP_126603188.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
EL291_RS04400 983111..983401 - 291 WP_126603190.1 hypothetical protein Antitoxin
EL291_RS04405 983739..983945 - 207 WP_004865664.1 hypothetical protein -
EL291_RS04410 984166..985332 - 1167 WP_126603192.1 site-specific integrase -
EL291_RS04415 985499..986005 + 507 WP_126604030.1 hypothetical protein -
EL291_RS04420 986831..987163 + 333 WP_126603194.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 950692..1070768 120076


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-89)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10581.69 Da        Isoelectric Point: 11.0482

>T288015 WP_126603188.1 NZ_LR134529:c983114-982842 [Bartonella vinsonii]
MKIIWTRIAHVDRKKIREYIAQDNPSSALKFDKLLSEKVEKLVKFPTLGRLGRIINTRELVVHPNYIMIYDISNGVVRIL
RVLHAKKKFP

Download         Length: 273 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 11194.54 Da        Isoelectric Point: 4.7776

>AT288015 WP_126603190.1 NZ_LR134529:c983401-983111 [Bartonella vinsonii]
MAETTFTFRVDDVLKNEFSKAAKACDRSGAQLLRDYMRDIVKEQKEKSAHELWFREQVQLGINSANTGDVISSEEIEAEA
EEWRFEIQRKLNRPTL

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References