Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | pasABC/RelE-HTH |
| Location | 660965..661445 | Replicon | chromosome |
| Accession | NZ_LR134527 | ||
| Organism | Bartonella elizabethae strain NCTC12898 | ||
Toxin (Protein)
| Gene name | pasB | Uniprot ID | J1A2R4 |
| Locus tag | EL285_RS02825 | Protein ID | WP_005773373.1 |
| Coordinates | 661176..661445 (+) | Length | 90 a.a. |
Antitoxin (Protein)
| Gene name | pasA | Uniprot ID | J0RIR3 |
| Locus tag | EL285_RS02820 | Protein ID | WP_005773372.1 |
| Coordinates | 660965..661192 (+) | Length | 76 a.a. |
Genomic Context
Location: 656531..656992 (462 bp)
Type: Others
Protein ID: WP_078674257.1
Type: Others
Protein ID: WP_078674257.1
Location: 657263..657781 (519 bp)
Type: Others
Protein ID: WP_005773365.1
Type: Others
Protein ID: WP_005773365.1
Location: 657862..658563 (702 bp)
Type: Others
Protein ID: WP_005773367.1
Type: Others
Protein ID: WP_005773367.1
Location: 659877..660314 (438 bp)
Type: Others
Protein ID: WP_005773370.1
Type: Others
Protein ID: WP_005773370.1
Location: 660330..660866 (537 bp)
Type: Others
Protein ID: WP_005773371.1
Type: Others
Protein ID: WP_005773371.1
Location: 660965..661192 (228 bp)
Type: Antitoxin
Protein ID: WP_005773372.1
Type: Antitoxin
Protein ID: WP_005773372.1
Location: 661176..661445 (270 bp)
Type: Toxin
Protein ID: WP_005773373.1
Type: Toxin
Protein ID: WP_005773373.1
Location: 661633..661968 (336 bp)
Type: Others
Protein ID: WP_005773374.1
Type: Others
Protein ID: WP_005773374.1
Location: 661970..663142 (1173 bp)
Type: Others
Protein ID: WP_005773375.1
Type: Others
Protein ID: WP_005773375.1
Location: 658633..658950 (318 bp)
Type: Others
Protein ID: WP_005773368.1
Type: Others
Protein ID: WP_005773368.1
Location: 658940..659218 (279 bp)
Type: Others
Protein ID: WP_005773369.1
Type: Others
Protein ID: WP_005773369.1
Location: 664607..665386 (780 bp)
Type: Others
Protein ID: WP_005773376.1
Type: Others
Protein ID: WP_005773376.1
Location: 665482..666102 (621 bp)
Type: Others
Protein ID: WP_005773377.1
Type: Others
Protein ID: WP_005773377.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL285_RS02785 | 656531..656992 | + | 462 | WP_078674257.1 | hypothetical protein | - |
| EL285_RS02790 | 657263..657781 | + | 519 | WP_005773365.1 | Rha family transcriptional regulator | - |
| EL285_RS02795 | 657862..658563 | + | 702 | WP_005773367.1 | hypothetical protein | - |
| EL285_RS02800 | 658633..658950 | - | 318 | WP_005773368.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| EL285_RS02805 | 658940..659218 | - | 279 | WP_005773369.1 | hypothetical protein | - |
| EL285_RS02810 | 659877..660314 | + | 438 | WP_005773370.1 | single-stranded DNA-binding protein | - |
| EL285_RS02815 | 660330..660866 | + | 537 | WP_005773371.1 | hypothetical protein | - |
| EL285_RS02820 | 660965..661192 | + | 228 | WP_005773372.1 | ribbon-helix-helix protein, CopG family | Antitoxin |
| EL285_RS02825 | 661176..661445 | + | 270 | WP_005773373.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| EL285_RS02830 | 661633..661968 | + | 336 | WP_005773374.1 | hypothetical protein | - |
| EL285_RS02835 | 661970..663142 | + | 1173 | WP_005773375.1 | phage terminase large subunit | - |
| EL285_RS02840 | 664607..665386 | - | 780 | WP_005773376.1 | hypothetical protein | - |
| EL285_RS02845 | 665482..666102 | - | 621 | WP_005773377.1 | hypothetical protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 636268..683884 | 47616 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.