Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3794470..3794583 Replicon chromosome
Accession NZ_LR134493
Organism Serratia rubidaea strain NCTC10036

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3794487..3794583 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3794470..3794583 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL320_RS18085 3790107..3791066 + 960 WP_126532210.1 prolyl aminopeptidase -
EL320_RS18090 3791113..3791343 - 231 WP_015672700.1 DNA polymerase III subunit theta -
EL320_RS18095 3791732..3792253 + 522 WP_015672699.1 non-heme ferritin -
EL320_RS18100 3792667..3793050 + 384 WP_126532212.1 CopC domain-containing protein YobA -
EL320_RS18105 3793054..3793935 + 882 WP_126532214.1 copper homeostasis membrane protein CopD -
EL320_RS18110 3794004..3794345 + 342 WP_126532216.1 YebY family protein -
- 3794470..3794583 - 114 - - Antitoxin
- 3794487..3794583 + 97 - - Toxin
EL320_RS18115 3794995..3795339 + 345 WP_126532218.1 hypothetical protein -
EL320_RS18120 3795697..3796788 - 1092 WP_126532220.1 Rieske 2Fe-2S domain-containing protein -
EL320_RS18125 3796811..3798514 - 1704 WP_126532222.1 tryptophan 7-halogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 97 bp

>T287960 NZ_LR134493:3794487-3794583 [Serratia rubidaea]
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT

Antitoxin


Download         Length: 114 bp

>AT287960 NZ_LR134493:c3794583-3794470 [Serratia rubidaea]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References