Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 634427..634962 Replicon chromosome
Accession NZ_LR134493
Organism Serratia rubidaea strain NCTC10036

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag EL320_RS03235 Protein ID WP_126530506.1
Coordinates 634675..634962 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag EL320_RS03230 Protein ID WP_126530505.1
Coordinates 634427..634678 (+) Length 84 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL320_RS03205 630448..630990 - 543 WP_015671079.1 hypothetical protein -
EL320_RS03210 630990..631676 - 687 WP_054305336.1 acireductone synthase -
EL320_RS03215 631673..632287 - 615 WP_126530502.1 methylthioribulose 1-phosphate dehydratase -
EL320_RS03220 632422..633582 + 1161 WP_126530503.1 pyridoxal phosphate-dependent aminotransferase -
EL320_RS03225 633570..634343 + 774 WP_126530504.1 amidohydrolase -
EL320_RS03230 634427..634678 + 252 WP_126530505.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
EL320_RS03235 634675..634962 + 288 WP_126530506.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
EL320_RS03245 635266..636144 - 879 WP_126530507.1 siderophore-interacting protein -
EL320_RS03250 636166..637368 - 1203 WP_126530508.1 MFS transporter -
EL320_RS03255 637507..639252 + 1746 WP_126530509.1 IucA/IucC family siderophore biosynthesis protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(4-81)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 96 a.a.        Molecular weight: 10892.98 Da        Isoelectric Point: 10.2302

>T287956 WP_126530506.1 NZ_LR134493:634675-634962 [Serratia rubidaea]
MTYKVKFCESALKEWNRLDKALQQQFAKKLKKCCENPHIPAAKLRGMPGCYKIKLRASGFRLVYEVIDDCLVIAVVAVGK
RERGSVYQLSSERLK

Download         Length: 288 bp


Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9282.54 Da        Isoelectric Point: 3.9798

>AT287956 WP_126530505.1 NZ_LR134493:634427-634678 [Serratia rubidaea]
VPNIILSDTSASISELKKNPMGTVNAGEGYPVAILNRNQPAFYCVPAALYEQMLDMLDEQELVRLVNERRNEALIDVDLD
QFT

Download         Length: 252 bp


Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References