Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | relBE/ParE-YafN |
Location | 634427..634962 | Replicon | chromosome |
Accession | NZ_LR134493 | ||
Organism | Serratia rubidaea strain NCTC10036 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | EL320_RS03235 | Protein ID | WP_126530506.1 |
Coordinates | 634675..634962 (+) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | EL320_RS03230 | Protein ID | WP_126530505.1 |
Coordinates | 634427..634678 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EL320_RS03205 | 630448..630990 | - | 543 | WP_015671079.1 | hypothetical protein | - |
EL320_RS03210 | 630990..631676 | - | 687 | WP_054305336.1 | acireductone synthase | - |
EL320_RS03215 | 631673..632287 | - | 615 | WP_126530502.1 | methylthioribulose 1-phosphate dehydratase | - |
EL320_RS03220 | 632422..633582 | + | 1161 | WP_126530503.1 | pyridoxal phosphate-dependent aminotransferase | - |
EL320_RS03225 | 633570..634343 | + | 774 | WP_126530504.1 | amidohydrolase | - |
EL320_RS03230 | 634427..634678 | + | 252 | WP_126530505.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
EL320_RS03235 | 634675..634962 | + | 288 | WP_126530506.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
EL320_RS03245 | 635266..636144 | - | 879 | WP_126530507.1 | siderophore-interacting protein | - |
EL320_RS03250 | 636166..637368 | - | 1203 | WP_126530508.1 | MFS transporter | - |
EL320_RS03255 | 637507..639252 | + | 1746 | WP_126530509.1 | IucA/IucC family siderophore biosynthesis protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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