Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2671987..2672258 | Replicon | chromosome |
| Accession | NC_020163 | ||
| Organism | Escherichia coli APEC O78 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2672025..2672128 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2671987..2672258 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APECO78_RS13485 | 2669144..2670583 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| APECO78_RS13490 | 2670701..2670937 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| APECO78_RS13495 | 2671042..2671233 | + | 192 | WP_001296140.1 | YebW family protein | - |
| APECO78_RS13500 | 2671234..2671890 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2671987..2672258 | + | 272 | - | - | Antitoxin |
| - | 2672025..2672128 | - | 104 | - | - | Toxin |
| APECO78_RS13510 | 2672286..2672627 | - | 342 | WP_000976492.1 | YebY family protein | - |
| APECO78_RS13515 | 2672640..2673512 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| APECO78_RS13520 | 2673516..2673890 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| APECO78_RS13525 | 2674029..2674259 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| APECO78_RS13530 | 2674361..2675017 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| APECO78_RS13535 | 2675041..2675703 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T28793 NC_020163:c2672128-2672025 [Escherichia coli APEC O78]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT28793 NC_020163:2671987-2672258 [Escherichia coli APEC O78]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
