Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2055945..2056093 | Replicon | chromosome |
| Accession | NZ_LR134478 | ||
| Organism | Serratia plymuthica strain NCTC8015 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2055989..2056085 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2055945..2056093 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL316_RS09900 | 2051394..2052710 | + | 1317 | WP_126527886.1 | IS4 family transposase | - |
| EL316_RS09905 | 2052739..2052969 | - | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| EL316_RS09910 | 2053344..2053862 | + | 519 | WP_126527887.1 | non-heme ferritin | - |
| EL316_RS09915 | 2054168..2054551 | + | 384 | WP_126482019.1 | CopC domain-containing protein YobA | - |
| EL316_RS09920 | 2054555..2055436 | + | 882 | WP_126482021.1 | copper homeostasis membrane protein CopD | - |
| EL316_RS09925 | 2055506..2055847 | + | 342 | WP_126482023.1 | YebY family protein | - |
| - | 2055945..2056093 | - | 149 | - | - | Antitoxin |
| - | 2055989..2056085 | + | 97 | - | - | Toxin |
| EL316_RS09930 | 2056174..2057256 | - | 1083 | WP_126527888.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| EL316_RS09935 | 2057231..2057572 | - | 342 | WP_126527889.1 | excisionase | - |
| EL316_RS25580 | 2057789..2057965 | - | 177 | WP_172603346.1 | hypothetical protein | - |
| EL316_RS09950 | 2058307..2058549 | + | 243 | WP_126527891.1 | hypothetical protein | - |
| EL316_RS09955 | 2058725..2058916 | + | 192 | WP_126527892.1 | hypothetical protein | - |
| EL316_RS09960 | 2058987..2059580 | + | 594 | Protein_1905 | DUF1367 family protein | - |
| EL316_RS09965 | 2059577..2059864 | + | 288 | WP_126527893.1 | DUF1364 domain-containing protein | - |
| EL316_RS09970 | 2059861..2060361 | + | 501 | WP_126527894.1 | DUF1133 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2051394..2077744 | 26350 | |
| - | flank | IS/Tn | - | - | 2051394..2052710 | 1316 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T287907 NZ_LR134478:2055989-2056085 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT287907 NZ_LR134478:c2056093-2055945 [Serratia plymuthica]
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
