Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1990333..1990479 | Replicon | chromosome |
| Accession | NZ_LR134475 | ||
| Organism | Klebsiella aerogenes strain NCTC9735 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1990368..1990471 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1990333..1990479 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL280_RS09690 | 1985442..1987502 | + | 2061 | WP_046883145.1 | oligopeptidase B | - |
| EL280_RS09695 | 1987505..1988164 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| EL280_RS09700 | 1988244..1988474 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| EL280_RS09705 | 1988609..1988983 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| EL280_RS09710 | 1988987..1989856 | + | 870 | WP_042893412.1 | copper homeostasis membrane protein CopD | - |
| EL280_RS09715 | 1989870..1990211 | + | 342 | WP_126337710.1 | YebY family protein | - |
| - | 1990333..1990479 | - | 147 | - | - | Antitoxin |
| - | 1990368..1990471 | + | 104 | - | - | Toxin |
| EL280_RS09720 | 1990599..1991552 | - | 954 | WP_126337712.1 | spore coat U domain-containing protein | - |
| EL280_RS09725 | 1991565..1993889 | - | 2325 | WP_048228936.1 | fimbrial biogenesis outer membrane usher protein | - |
| EL280_RS09730 | 1993892..1994641 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| EL280_RS09735 | 1994659..1995177 | - | 519 | WP_045411482.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287892 NZ_LR134475:1990368-1990471 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT287892 NZ_LR134475:c1990479-1990333 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
