Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2566111..2566205 | Replicon | chromosome |
| Accession | NZ_LR134373 | ||
| Organism | Yersinia pseudotuberculosis strain NCTC10275 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2566112..2566205 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2566111..2566205 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL213_RS11645 | 2561898..2562338 | + | 441 | WP_024063381.1 | hypothetical protein | - |
| EL213_RS11650 | 2562360..2563334 | + | 975 | WP_012413651.1 | hypothetical protein | - |
| EL213_RS11655 | 2563751..2564155 | + | 405 | Protein_2183 | hypothetical protein | - |
| EL213_RS11660 | 2564099..2565307 | - | 1209 | WP_126287356.1 | IS256 family transposase | - |
| EL213_RS11665 | 2565526..2565852 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
| - | 2566111..2566205 | + | 95 | - | - | Antitoxin |
| - | 2566112..2566205 | - | 94 | - | - | Toxin |
| EL213_RS11675 | 2566375..2566716 | - | 342 | WP_002211095.1 | YebY family protein | - |
| EL213_RS11680 | 2566813..2567697 | - | 885 | WP_012304224.1 | copper homeostasis membrane protein CopD | - |
| EL213_RS11685 | 2567700..2568086 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| EL213_RS11690 | 2568481..2568990 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| EL213_RS11695 | 2569391..2569621 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| EL213_RS11700 | 2569681..2570631 | - | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2564099..2565307 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T287824 NZ_LR134373:c2566205-2566112 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT287824 NZ_LR134373:2566111-2566205 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
