Detailed information of TA system TA028777

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RelE-Phd
• Location: 3174998..3175546
• Replicon: chromosome
• Accession: NC_020089
• Organism: Mycobacterium tuberculosis 7199-99

Toxin (Protein)

• Gene name: relE
• Uniprot ID: G0TFG5
• Locus tag: MT7199_RS15025
• Protein ID: WP_003414602.1
• Coordinates: 3175283..3175546 (+)
• Length: 88 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: O33347
• Locus tag: MT7199_RS15020
• Protein ID: WP_003414599.1
• Coordinates: 3174998..3175279 (+)
• Length: 94 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MT7199_RS14995	3170621..3171478	-	858	WP_003899513.1	type I methionyl aminopeptidase	-
MT7199_RS15000	3171520..3172104	-	585	WP_003899514.1	DUF1707 domain-containing protein	-
MT7199_RS15005	3172208..3172456	+	249	WP_003913411.1	antitoxin VapB23	-
MT7199_RS15010	3172453..3172833	+	381	WP_003414592.1	type II toxin-antitoxin system VapC family toxin	-
MT7199_RS15015	3172915..3174726	-	1812	WP_003414596.1	penicillin-binding protein	-
MT7199_RS15020	3174998..3175279	+	282	WP_003414599.1	type II toxin-antitoxin system antitoxin RelF	Antitoxin
MT7199_RS15025	3175283..3175546	+	264	WP_003414602.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
MT7199_RS15030	3175919..3176773	-	855	WP_003899516.1	GNAT family N-acetyltransferase	-
MT7199_RS15035	3176829..3177992	-	1164	WP_003899517.1	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	-
MT7199_RS15040	3178009..3179223	-	1215	WP_003899518.1	zinc metalloprotease Rip	-
MT7199_RS15045	3179231..3180472	-	1242	WP_003414613.1	1-deoxy-D-xylulose-5-phosphate reductoisomerase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (5-85)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-72)

Sequences

Toxin

Protein

• Length: 88 a.a.
• Molecular weight: 10204.82 Da
• Isoelectric Point: 11.5078

>T28777 WP_003414602.1 NC_020089:3175283-3175546 [Mycobacterium tuberculosis 7199-99]
VPYTVRFTTTARRDLHKLPPRILAAVVEFAFGDLSREPLRVGKPLRRELAGTFSARRGTYRLLYRIDDEHTTVVILRVDH
RADIYRR

Nucleotide

• Length: 264 bp

>T28777 NC_020089:3175283-3175546 [Mycobacterium tuberculosis 7199-99]
GTGCCTTACACCGTGCGGTTCACCACAACCGCGCGTCGAGACCTCCACAAGCTGCCACCGCGAATCCTCGCGGCAGTGGT
CGAATTCGCGTTCGGCGATCTGTCGCGCGAGCCCCTGCGGGTGGGCAAGCCCCTTCGGCGCGAGTTGGCCGGCACGTTCA
GCGCGCGTCGCGGAACGTACCGCCTGCTGTACCGGATTGACGACGAGCACACAACGGTAGTGATCCTGCGCGTCGATCAC
CGCGCGGACATCTACCGCCGATAG

Antitoxin

Protein

• Length: 94 a.a.
• Molecular weight: 10183.40 Da
• Isoelectric Point: 4.3440

>AT28777 WP_003414599.1 NC_020089:3174998-3175279 [Mycobacterium tuberculosis 7199-99]
MRILPISTIKGKLNEFVDAVSSTQDQITITKNGAPAAVLVGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGED
EIRAEFGVPRRPH

Nucleotide

• Length: 282 bp

>AT28777 NC_020089:3174998-3175279 [Mycobacterium tuberculosis 7199-99]
ATGCGGATACTGCCGATTTCGACGATCAAGGGCAAGCTCAATGAGTTCGTCGACGCGGTCTCGTCGACACAGGACCAGAT
CACCATCACCAAGAACGGTGCACCCGCAGCCGTTCTGGTCGGCGCCGACGAGTGGGAATCGTTGCAGGAGACGCTGTACT
GGCTGGCGCAACCCGGAATCAGGGAGTCGATCGCTGAAGCCGACGCCGACATTGCCTCCGGCCGCACCTACGGCGAAGAC
GAGATCCGCGCCGAATTCGGCGTCCCGCGACGCCCCCACTGA

Structures

Toxin

• PDB: 3G5O

Antitoxin

• AlphaFold DB: A0A7U4BWP8