Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1926778..1927023 | Replicon | chromosome |
| Accession | NZ_LR134340 | ||
| Organism | Escherichia marmotae strain NCTC11133 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1926906..1927009 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1926778..1927023 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL192_RS09135 | 1923331..1923993 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| EL192_RS09140 | 1924018..1924674 | - | 657 | WP_016261948.1 | carbon-nitrogen hydrolase family protein | - |
| EL192_RS09145 | 1924775..1925005 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| EL192_RS09150 | 1925144..1925518 | + | 375 | WP_016261949.1 | CopC domain-containing protein YobA | - |
| EL192_RS09155 | 1925522..1926394 | + | 873 | WP_000879335.1 | copper homeostasis membrane protein CopD | - |
| EL192_RS09160 | 1926407..1926748 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - | 1926778..1927023 | - | 246 | - | - | Antitoxin |
| - | 1926906..1927009 | + | 104 | - | - | Toxin |
| EL192_RS09165 | 1927158..1927814 | + | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| EL192_RS09170 | 1927815..1928006 | - | 192 | WP_001516263.1 | YebW family protein | - |
| EL192_RS09175 | 1928111..1928347 | - | 237 | WP_001516264.1 | DUF1480 family protein | - |
| EL192_RS09180 | 1928463..1929902 | - | 1440 | WP_024214557.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1817590..1956022 | 138432 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287748 NZ_LR134340:1926906-1927009 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT287748 NZ_LR134340:c1927023-1926778 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGTACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGTACCCGGGCGG
TTTTTT
