Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 656380..656498 | Replicon | chromosome |
| Accession | NZ_LR134335 | ||
| Organism | Yersinia enterocolitica subsp. palearctica strain NCTC13769 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 656382..656476 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 656380..656498 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL202_RS03305 | 652208..652660 | + | 453 | WP_005163578.1 | phage tail protein | - |
| EL202_RS03310 | 652657..653799 | + | 1143 | WP_005163579.1 | phage late control D family protein | - |
| EL202_RS03315 | 653892..654113 | + | 222 | WP_005163580.1 | DNA-binding transcriptional regulator | - |
| EL202_RS03320 | 654198..655013 | - | 816 | WP_005163581.1 | hypothetical protein | - |
| EL202_RS03325 | 655254..656324 | + | 1071 | WP_023161015.1 | tyrosine-type recombinase/integrase | - |
| - | 656380..656498 | + | 119 | - | - | Antitoxin |
| - | 656382..656476 | - | 95 | - | - | Toxin |
| EL202_RS03330 | 656651..656992 | - | 342 | WP_005163587.1 | YebY family protein | - |
| EL202_RS03335 | 657089..657973 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| EL202_RS03340 | 657975..658361 | - | 387 | WP_005163603.1 | CopC domain-containing protein YobA | - |
| EL202_RS03345 | 658752..659261 | - | 510 | WP_005163604.1 | non-heme ferritin | - |
| EL202_RS03350 | 659644..659877 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| EL202_RS03355 | 659927..660883 | - | 957 | WP_005163605.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | ystA | 499767..755356 | 255589 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T287725 NZ_LR134335:c656476-656382 [Yersinia enterocolitica subsp. palearctica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT287725 NZ_LR134335:656380-656498 [Yersinia enterocolitica subsp. palearctica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
