Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ygfYX/Cpta(toxin)
Location 3552816..3553485 Replicon chromosome
Accession NZ_LR134321
Organism Shewanella baltica strain NCTC10737

Toxin (Protein)


Gene name ygfX Uniprot ID -
Locus tag EL185_RS15430 Protein ID WP_126492495.1
Coordinates 3552816..3553256 (-) Length 147 a.a.

Antitoxin (Protein)


Gene name ygfY Uniprot ID -
Locus tag EL185_RS15435 Protein ID WP_126492496.1
Coordinates 3553237..3553485 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL185_RS15405 3548285..3548758 - 474 WP_006080776.1 SoxR reducing system RseC family protein -
EL185_RS15410 3548769..3549701 - 933 WP_006080775.1 MucB/RseB C-terminal domain-containing protein -
EL185_RS15415 3549717..3550340 - 624 WP_126492493.1 anti-sigma factor -
EL185_RS15420 3550382..3550960 - 579 WP_006080773.1 RNA polymerase sigma factor RpoE -
EL185_RS15425 3551150..3552763 + 1614 WP_126492494.1 L-aspartate oxidase -
EL185_RS15430 3552816..3553256 - 441 WP_126492495.1 hypothetical protein Toxin
EL185_RS15435 3553237..3553485 - 249 WP_126492496.1 succinate dehydrogenase assembly factor 2 Antitoxin
EL185_RS15440 3553571..3554479 - 909 WP_063884532.1 transcriptional activator NhaR -
EL185_RS15445 3554552..3554938 - 387 WP_126492497.1 hypothetical protein -
EL185_RS15450 3554941..3556110 - 1170 WP_006080767.1 Na+/H+ antiporter NhaA -
EL185_RS15455 3556228..3557022 - 795 WP_006080766.1 thymidylate synthase -
EL185_RS15460 3557019..3557828 - 810 WP_126492498.1 prolipoprotein diacylglyceryl transferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(6-135)

Antitoxin

Flavinator of succinate dehydrogenase

(7-77)


Sequences

Toxin        


Download         Length: 147 a.a.        Molecular weight: 17374.43 Da        Isoelectric Point: 7.7168

>T287675 WP_126492495.1 NZ_LR134321:c3553256-3552816 [Shewanella baltica]
VEDRHHSFSVKASFDQRLSLVVFICVCSSSFLLWPQSDNLTLSLLKYMFILLVCIFLLSQLWRLQHWRLDFVLSDKGEGR
LSTGEHFQVLRRTWVTPFVCLMYIEVDTQLRLLMVWADMLDDTDYRHLCRLLLRAKIQQTKPHTEI

Download         Length: 441 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9722.37 Da        Isoelectric Point: 4.6127

>AT287675 WP_126492496.1 NZ_LR134321:c3553485-3553237 [Shewanella baltica]
MELMNIARVRWACRRGMLELDVLFQPFVENFYQEMSDQDKTVFIRLLECEDPELFAWFMGHEVCPDAELARMVVKVRGRP
AP

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References