Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VII | Classification (family/domain) | HepT-MntA/HepT(toxin) |
Location | 1637974..1638805 | Replicon | chromosome |
Accession | NZ_LR134321 | ||
Organism | Shewanella baltica strain NCTC10737 |
Toxin (Protein)
Gene name | hepT | Uniprot ID | - |
Locus tag | EL185_RS07080 | Protein ID | WP_088585313.1 |
Coordinates | 1637974..1638390 (-) | Length | 139 a.a. |
Antitoxin (Protein)
Gene name | mntA | Uniprot ID | - |
Locus tag | EL185_RS07085 | Protein ID | WP_126491558.1 |
Coordinates | 1638383..1638805 (-) | Length | 141 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EL185_RS07060 | 1633166..1633713 | + | 548 | Protein_1362 | sugar transferase | - |
EL185_RS07065 | 1634211..1636151 | + | 1941 | WP_126491556.1 | polysaccharide biosynthesis protein | - |
EL185_RS07070 | 1636226..1637578 | + | 1353 | WP_126491557.1 | phosphoglucosamine mutase | - |
EL185_RS07080 | 1637974..1638390 | - | 417 | WP_088585313.1 | DUF86 domain-containing protein | Toxin |
EL185_RS07085 | 1638383..1638805 | - | 423 | WP_126491558.1 | nucleotidyltransferase domain-containing protein | Antitoxin |
EL185_RS07090 | 1639177..1639437 | + | 261 | WP_115017884.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
EL185_RS07095 | 1639439..1639786 | + | 348 | WP_126491559.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
EL185_RS07100 | 1639998..1641206 | + | 1209 | WP_126491560.1 | J domain-containing protein | - |
EL185_RS07105 | 1641922..1642161 | + | 240 | WP_126491561.1 | CopG family ribbon-helix-helix protein | - |
EL185_RS07110 | 1642151..1642435 | + | 285 | WP_126491562.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 139 a.a. Molecular weight: 16056.55 Da Isoelectric Point: 7.3244
>T287670 WP_088585313.1 NZ_LR134321:c1638390-1637974 [Shewanella baltica]
MNDIIINKIATIKRCIKRIQQVYGDGSMFKQDFTLQDSVILNLQRCCEASIDIANHINRQQQLGIPQSSRDSFTLLSQNK
IINQQLADNLKKMVGLRNIAVHDYQELNLDIVVHVVQHHLEDFEQFIEVIKFCPRMSY
MNDIIINKIATIKRCIKRIQQVYGDGSMFKQDFTLQDSVILNLQRCCEASIDIANHINRQQQLGIPQSSRDSFTLLSQNK
IINQQLADNLKKMVGLRNIAVHDYQELNLDIVVHVVQHHLEDFEQFIEVIKFCPRMSY
Download Length: 417 bp
Antitoxin
Download Length: 141 a.a. Molecular weight: 15859.91 Da Isoelectric Point: 5.1231
>AT287670 WP_126491558.1 NZ_LR134321:c1638805-1638383 [Shewanella baltica]
MQQLNESIIINLLQDNIPQLRLIYLFGSYAQGTQHRNSDIDIAVLADVTVDNIARWQLAQKLASALDTDVDLVDLRTAST
VLCQQVVTQGKRLWGTRQDDEIFAVKTISMYQHLQAERQAIIDDATAKTIANDHRGRHFE
MQQLNESIIINLLQDNIPQLRLIYLFGSYAQGTQHRNSDIDIAVLADVTVDNIARWQLAQKLASALDTDVDLVDLRTAST
VLCQQVVTQGKRLWGTRQDDEIFAVKTISMYQHLQAERQAIIDDATAKTIANDHRGRHFE
Download Length: 423 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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