287663

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-YefM
Location 4851298..4851803 Replicon chromosome
Accession NZ_LR134318
Organism Pseudomonas fluorescens strain NCTC9428

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag EL257_RS21990 Protein ID WP_126366168.1
Coordinates 4851549..4851803 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag EL257_RS21985 Protein ID WP_126366166.1
Coordinates 4851298..4851552 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL257_RS21960 4846948..4847208 - 261 WP_126366152.1 hypothetical protein -
EL257_RS21965 4847416..4847745 + 330 WP_126366154.1 hypothetical protein -
EL257_RS21970 4847764..4848132 - 369 WP_126366156.1 PH domain-containing protein -
EL257_RS21975 4848336..4849079 + 744 WP_126366162.1 hypothetical protein -
EL257_RS21980 4849137..4851065 + 1929 WP_126366164.1 alkaline phosphatase family protein -
EL257_RS21985 4851298..4851552 + 255 WP_126366166.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
EL257_RS21990 4851549..4851803 + 255 WP_126366168.1 Txe/YoeB family addiction module toxin Toxin
EL257_RS21995 4851797..4852984 - 1188 WP_126366170.1 aspartate aminotransferase family protein -
EL257_RS22000 4853087..4854013 + 927 WP_126366172.1 LysR family transcriptional regulator -
EL257_RS22005 4854147..4854848 + 702 WP_126366174.1 hypothetical protein -
EL257_RS22010 4855121..4855612 - 492 WP_126366176.1 RidA family protein -
EL257_RS22015 4855851..4856738 - 888 WP_126366179.1 heme o synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 9963.50 Da        Isoelectric Point: 8.4985

>T287663 WP_126366168.1 NZ_LR134318:4851549-4851803 [Pseudomonas fluorescens]
MKIEFTPTGWEDYLWFQQHDKPGLKRINLLIKSIKREPFEGVGKPEALKHNMSGLWSRRITAEHRLVYSVEDGEICVVSC
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9489.89 Da        Isoelectric Point: 5.8315

>AT287663 WP_126366166.1 NZ_LR134318:4851298-4851552 [Pseudomonas fluorescens]
MQTINYTTARAHLAETMDRVNDDRAPLLITRQKGDPVVMMSLAEYNALEETAYLLRSPANAERLMKSIGELRAGKAQVRQ
LIEE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References