287661

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2201519..2201984 Replicon chromosome
Accession NZ_LR134318
Organism Pseudomonas fluorescens strain NCTC9428

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag EL257_RS09980 Protein ID WP_081265248.1
Coordinates 2201519..2201812 (-) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag EL257_RS09985 Protein ID WP_081500483.1
Coordinates 2201793..2201984 (-) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL257_RS09950 2196760..2197299 + 540 WP_126362083.1 type II secretion system protein -
EL257_RS09955 2197296..2197688 + 393 WP_126362085.1 curli production assembly/transport protein CsgE -
EL257_RS09960 2197685..2198116 + 432 WP_126362087.1 curli production assembly protein CsgF -
EL257_RS09965 2198146..2199012 + 867 WP_126362090.1 curli production assembly/transport protein CsgG -
EL257_RS09970 2200789..2201157 + 369 WP_126362092.1 hypothetical protein -
EL257_RS09975 2201232..2201435 + 204 WP_126368041.1 antitoxin -
EL257_RS09980 2201519..2201812 - 294 WP_081265248.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
EL257_RS09985 2201793..2201984 - 192 WP_081500483.1 antitoxin Antitoxin
EL257_RS09990 2202312..2203763 - 1452 WP_126362094.1 curlin -
EL257_RS09995 2203790..2204254 - 465 WP_126362096.1 curlin -
EL257_RS10000 2204328..2206556 - 2229 WP_126362098.1 cadherin-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11271.09 Da        Isoelectric Point: 10.0609

>T287661 WP_081265248.1 NZ_LR134318:c2201812-2201519 [Pseudomonas fluorescens]
MVSRPIEWRPEARAKLVTVLEYIVERNVGAAKEILKAVGKAIAYLPDHPYLYRSGRITGTREIVVNSSYLIIYRVTDRIE
IVNVLHARQEYPRRDSF

Download         Length: 294 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7094.88 Da        Isoelectric Point: 4.0922

>AT287661 WP_081500483.1 NZ_LR134318:c2201984-2201793 [Pseudomonas fluorescens]
MIDPLCPVVSNLDPEEQAASYDRWFRAEVQASLDDPRPNLSHEQVMAEIHALIKAKDNGFEAD

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References