Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1929471..1929739 | Replicon | chromosome |
| Accession | NZ_LR134315 | ||
| Organism | Escherichia coli strain NCTC9064 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1929598..1929701 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1929471..1929739 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL184_RS09385 | 1926024..1926686 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL184_RS09390 | 1926710..1927366 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL184_RS09395 | 1927468..1927698 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL184_RS09400 | 1927837..1928211 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| EL184_RS09405 | 1928215..1929087 | + | 873 | WP_096835321.1 | copper homeostasis membrane protein CopD | - |
| EL184_RS09410 | 1929100..1929441 | + | 342 | WP_000976478.1 | YebY family protein | - |
| - | 1929471..1929739 | - | 269 | - | - | Antitoxin |
| - | 1929598..1929701 | + | 104 | - | - | Toxin |
| EL184_RS09415 | 1929836..1930492 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| EL184_RS09420 | 1930493..1930684 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EL184_RS09425 | 1930789..1931025 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL184_RS09430 | 1931143..1932582 | - | 1440 | WP_001343151.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287643 NZ_LR134315:1929598-1929701 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT287643 NZ_LR134315:c1929739-1929471 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
