Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2089250..2089521 | Replicon | chromosome |
| Accession | NZ_LR134311 | ||
| Organism | Escherichia coli strain NCTC9113 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2089380..2089483 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2089250..2089521 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL186_RS10165 | 2085805..2086467 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL186_RS10170 | 2086491..2087147 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| EL186_RS10175 | 2087249..2087479 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL186_RS10180 | 2087618..2087992 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EL186_RS10185 | 2087996..2088868 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EL186_RS10190 | 2088881..2089222 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2089250..2089521 | - | 272 | - | - | Antitoxin |
| - | 2089380..2089483 | + | 104 | - | - | Toxin |
| EL186_RS10195 | 2089618..2090274 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EL186_RS10200 | 2090275..2090466 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EL186_RS10205 | 2090571..2090807 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL186_RS10210 | 2090925..2092364 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287599 NZ_LR134311:2089380-2089483 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287599 NZ_LR134311:c2089521-2089250 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
