Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2840222..2840316 Replicon chromosome
Accession NZ_LR134306
Organism Yersinia pseudotuberculosis strain NCTC3571

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2840223..2840316 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2840222..2840316 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL172_RS13260 2835428..2837506 - 2079 WP_012413652.1 flagellar biosynthesis protein FlhA -
EL172_RS13265 2837506..2838666 - 1161 WP_050320623.1 flagellar type III secretion system protein FlhB -
EL172_RS13270 2839185..2839643 + 459 WP_002211098.1 hypothetical protein -
EL172_RS13275 2839637..2839963 + 327 WP_002211097.1 DUF1493 family protein -
- 2840222..2840316 + 95 - - Antitoxin
- 2840223..2840316 - 94 - - Toxin
EL172_RS13285 2840486..2840827 - 342 WP_002211095.1 YebY family protein -
EL172_RS13290 2840924..2841802 - 879 WP_126286974.1 copper homeostasis membrane protein CopD -
EL172_RS13295 2841805..2842191 - 387 WP_002211093.1 CopC domain-containing protein YobA -
EL172_RS13300 2842570..2843079 - 510 WP_002211092.1 non-heme ferritin -
EL172_RS13305 2843480..2843710 + 231 WP_002211091.1 DNA polymerase III subunit theta -
EL172_RS13310 2843770..2844720 - 951 WP_011192157.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T287566 NZ_LR134306:c2840316-2840223 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT287566 NZ_LR134306:2840222-2840316 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References