Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-YefM
Location 2447237..2447787 Replicon chromosome
Accession NZ_LR134303
Organism Shewanella putrefaciens strain NCTC12093

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag EL161_RS10750 Protein ID WP_086903216.1
Coordinates 2447237..2447536 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag EL161_RS10755 Protein ID WP_086903215.1
Coordinates 2447545..2447787 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL161_RS10750 2447237..2447536 - 300 WP_086903216.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
EL161_RS10755 2447545..2447787 - 243 WP_086903215.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
EL161_RS10760 2447981..2448724 - 744 WP_086903214.1 hypothetical protein -
EL161_RS10765 2448735..2449988 - 1254 WP_086903213.1 beta-ketoacyl-ACP synthase -
EL161_RS10770 2449989..2450714 - 726 WP_086903212.1 3-ketoacyl-ACP reductase FabG2 -
EL161_RS10775 2450840..2451379 - 540 WP_086903211.1 hotdog family protein -
EL161_RS10780 2451385..2452608 - 1224 WP_086903210.1 beta-ketoacyl-[acyl-carrier-protein] synthase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-64)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11529.32 Da        Isoelectric Point: 10.0230

>T287529 WP_086903216.1 NZ_LR134303:c2447536-2447237 [Shewanella putrefaciens]
MNNKRYKLSRLAQAHLLKIKDYTLQHFSESQWHKYKQSLISGLQMLANHPGLGRSCNDIYPNGFYFPIGKHTAYFTKEDD
FILIVALLGQPQLPQNHLK

Download         Length: 300 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8982.23 Da        Isoelectric Point: 5.0621

>AT287529 WP_086903215.1 NZ_LR134303:c2447787-2447545 [Shewanella putrefaciens]
MQTLTANDAKRNFGELLLNAQREPIKISKNSKDVVVVMSIHDYEQLEAMKADYLKHCFNAAKEDLAKGNVVDGEDFLNAL

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References