Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2009246..2009517 | Replicon | chromosome |
| Accession | NZ_LR134295 | ||
| Organism | Escherichia coli strain NCTC9080 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2009376..2009479 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2009246..2009517 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL145_RS09580 | 2005802..2006464 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL145_RS09585 | 2006488..2007144 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL145_RS09590 | 2007246..2007476 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL145_RS09595 | 2007615..2007989 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| EL145_RS09600 | 2007993..2008865 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| EL145_RS09605 | 2008878..2009219 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2009246..2009517 | - | 272 | - | - | Antitoxin |
| - | 2009376..2009479 | + | 104 | - | - | Toxin |
| EL145_RS09610 | 2009614..2010270 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EL145_RS09615 | 2010271..2010462 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EL145_RS09620 | 2010567..2010803 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL145_RS09625 | 2010921..2012360 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287471 NZ_LR134295:2009376-2009479 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287471 NZ_LR134295:c2009517-2009246 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
