Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 653493..653638 | Replicon | chromosome |
| Accession | NZ_LR134280 | ||
| Organism | Klebsiella pneumoniae strain NCTC9793 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 653529..653631 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 653493..653638 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL169_RS03550 | 648624..650683 | + | 2060 | Protein_587 | oligopeptidase B | - |
| EL169_RS03555 | 650687..651346 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| EL169_RS03560 | 651425..651655 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EL169_RS03565 | 651768..652142 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EL169_RS03570 | 652146..653015 | + | 870 | WP_064172307.1 | copper homeostasis membrane protein CopD | - |
| EL169_RS03575 | 653032..653370 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 653493..653638 | - | 146 | - | - | Antitoxin |
| - | 653529..653631 | + | 103 | - | - | Toxin |
| EL169_RS26865 | 654005..654148 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EL169_RS03585 | 654253..655221 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EL169_RS03590 | 655378..656031 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| EL169_RS03595 | 656028..656219 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EL169_RS03600 | 656317..656556 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EL169_RS03605 | 656672..658105 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T287441 NZ_LR134280:653529-653631 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT287441 NZ_LR134280:c653638-653493 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
