Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172455..2172700 | Replicon | chromosome |
| Accession | NZ_LR134270 | ||
| Organism | Escherichia marmotae strain NCTC8196 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2172583..2172686 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172455..2172700 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL146_RS10575 | 2169008..2169670 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| EL146_RS10580 | 2169695..2170351 | - | 657 | WP_000122137.1 | carbon-nitrogen hydrolase family protein | - |
| EL146_RS10585 | 2170452..2170682 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| EL146_RS10590 | 2170821..2171195 | + | 375 | WP_016248632.1 | CopC domain-containing protein YobA | - |
| EL146_RS10595 | 2171199..2172071 | + | 873 | WP_000879335.1 | copper homeostasis membrane protein CopD | - |
| EL146_RS10600 | 2172084..2172425 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - | 2172455..2172700 | - | 246 | - | - | Antitoxin |
| - | 2172583..2172686 | + | 104 | - | - | Toxin |
| EL146_RS10605 | 2172835..2173491 | + | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| EL146_RS10610 | 2173492..2173683 | - | 192 | WP_001516263.1 | YebW family protein | - |
| EL146_RS10615 | 2173788..2174024 | - | 237 | WP_001516264.1 | DUF1480 family protein | - |
| EL146_RS10620 | 2174140..2175579 | - | 1440 | WP_024193571.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2080108..2175621 | 95513 | |
| - | inside | Prophage | - | - | 2079637..2173491 | 93854 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287417 NZ_LR134270:2172583-2172686 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT287417 NZ_LR134270:c2172700-2172455 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCATTCTGGTGAAAGCACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCATTCTGGTGAAAGCACCCGGGCGG
TTTTTT
