Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1917752..1918023 | Replicon | chromosome |
| Accession | NZ_LR134248 | ||
| Organism | Escherichia coli strain NCTC10537 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1917882..1917985 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1917752..1918023 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL141_RS09150 | 1914308..1914970 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| EL141_RS09155 | 1914994..1915650 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| EL141_RS09160 | 1915752..1915982 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL141_RS09165 | 1916121..1916495 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL141_RS09170 | 1916499..1917371 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| EL141_RS09175 | 1917384..1917725 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1917752..1918023 | - | 272 | - | - | Antitoxin |
| - | 1917882..1917985 | + | 104 | - | - | Toxin |
| EL141_RS09180 | 1918120..1918776 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EL141_RS09185 | 1918777..1918968 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EL141_RS09190 | 1919073..1919309 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL141_RS09195 | 1919427..1920866 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287382 NZ_LR134248:1917882-1917985 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287382 NZ_LR134248:c1918023-1917752 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
